BRXL1_ORYSJ
ID BRXL1_ORYSJ Reviewed; 397 AA.
AC Q6YUB8; A0A0N7KPZ3;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Protein Brevis radix-like 1;
DE Short=OsBRXL1;
GN Name=BRXL1; OrderedLocusNames=Os08g0462700, LOC_Os08g36020;
GN ORFNames=B1111C03.19, B1116H04.7, OsJ_27591;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY.
RX PubMed=16514016; DOI=10.1104/pp.105.075382;
RA Briggs G.C., Mouchel C.F., Hardtke C.S.;
RT "Characterization of the plant-specific BREVIS RADIX gene family reveals
RT limited genetic redundancy despite high sequence conservation.";
RL Plant Physiol. 140:1306-1316(2006).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the BRX family. {ECO:0000305}.
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DR EMBL; AP005405; BAD10306.1; -; Genomic_DNA.
DR EMBL; AP005871; BAD10682.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF23900.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT05778.1; -; Genomic_DNA.
DR EMBL; CM000145; EAZ43004.1; -; Genomic_DNA.
DR EMBL; AK103661; BAG96195.1; -; mRNA.
DR EMBL; AK122163; BAH00829.1; -; mRNA.
DR RefSeq; XP_015648970.1; XM_015793484.1.
DR AlphaFoldDB; Q6YUB8; -.
DR SMR; Q6YUB8; -.
DR STRING; 4530.OS08T0462700-01; -.
DR PaxDb; Q6YUB8; -.
DR PRIDE; Q6YUB8; -.
DR EnsemblPlants; Os08t0462700-01; Os08t0462700-01; Os08g0462700.
DR GeneID; 4345773; -.
DR Gramene; Os08t0462700-01; Os08t0462700-01; Os08g0462700.
DR KEGG; osa:4345773; -.
DR eggNOG; ENOG502QTYG; Eukaryota.
DR HOGENOM; CLU_033380_0_1_1; -.
DR InParanoid; Q6YUB8; -.
DR OMA; NLGNGHR; -.
DR OrthoDB; 995616at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q6YUB8; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR InterPro; IPR013591; Brevis_radix_dom.
DR InterPro; IPR044532; BRX-like.
DR InterPro; IPR027988; BRX_N.
DR PANTHER; PTHR46058; PTHR46058; 1.
DR Pfam; PF08381; BRX; 2.
DR Pfam; PF13713; BRX_N; 1.
DR PROSITE; PS51514; BRX; 2.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Repeat.
FT CHAIN 1..397
FT /note="Protein Brevis radix-like 1"
FT /id="PRO_0000373826"
FT DOMAIN 150..205
FT /note="BRX 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00847"
FT DOMAIN 342..397
FT /note="BRX 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00847"
FT REGION 14..37
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 105..148
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 212..278
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 300..342
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 124..144
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 248..270
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 300..318
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 397 AA; 44031 MW; 12A8132E9B83ED98 CRC64;
MLTCIACSKQ LAGGAPPLRE QSDDADDAAV ARGAGECATP STRQAIKALT AQIKDMALKA
SGAYRHCKPC AGSSSSSPAA GARRHHPYHA YADSGSDRFH YAYRRAGSGG DATPSVSART
DFLAGDEEEE EEEEEEEGTT ADGSEDDEAK EWVAQVEPGV LITFLSLPEG GNDLKRIRFS
REIFNKWQAQ RWWAENYEKV MELYNVQRFN QQTPLPTTPK SEDESLKEDI PATPPLNSER
LPHTLHRSLT GGRTTGYGQP DSLGHQHNLG NGHRQQHHHC YTGHQCYGSV GLASTPKLSS
ISGAKTETSS MDASMRSSSS PEEVDRSREL SVSVSNASDQ EREWVEEDEP GVYITIRALP
GGIRELRRVR FSREKFSEMH ARLWWEENRA RIHDQYL
