TI10A_ORYSJ
ID TI10A_ORYSJ Reviewed; 228 AA.
AC Q84R94; A0A0P0VZ82;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Protein TIFY 10a {ECO:0000305};
DE Short=OsTIFY10a {ECO:0000303|PubMed:19618278};
DE AltName: Full=Jasmonate ZIM domain-containing protein 6 {ECO:0000305};
DE Short=OsJAZ6 {ECO:0000303|PubMed:19618278};
DE AltName: Full=OsJAZ5 {ECO:0000303|PubMed:23320078};
GN Name=TIFY10A {ECO:0000303|PubMed:19618278};
GN Synonyms=JAZ6 {ECO:0000303|PubMed:19618278};
GN OrderedLocusNames=Os03g0402800 {ECO:0000312|EMBL:BAF12236.1},
GN LOC_Os03g28940 {ECO:0000312|EMBL:ABF96480.1};
GN ORFNames=OsJ_11194 {ECO:0000312|EMBL:EAZ27256.1},
GN OSJNBb0041J20.5 {ECO:0000312|EMBL:AAP03360.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, NOMENCLATURE, AND INDUCTION.
RX PubMed=19618278; DOI=10.1007/s11103-009-9524-8;
RA Ye H., Du H., Tang N., Li X., Xiong L.;
RT "Identification and expression profiling analysis of TIFY family genes
RT involved in stress and phytohormone responses in rice.";
RL Plant Mol. Biol. 71:291-305(2009).
RN [8]
RP INTERACTION WITH COI1A AND COI1B.
RX PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA Do Choi Y.;
RT "Oryza sativa COI homologues restore jasmonate signal transduction in
RT Arabidopsis coi1-1 mutants.";
RL PLoS ONE 8:E52802-E52802(2013).
CC -!- FUNCTION: Repressor of jasmonate responses.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SUBUNIT: Interacts with COI1A and COI1B in a coronatine-dependent
CC manner. Coronatine is an analog of jasmonoyl isoleucine (JA-Ile).
CC {ECO:0000269|PubMed:23320078}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- INDUCTION: By jasmonate, wounding, and cold, drought and salt stresses.
CC Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:19618278}.
CC -!- DOMAIN: The jas domain (164-189) is required for interaction with COI1.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- PTM: Ubiquitinated. Targeted for degradation by the SCF(COI1) E3
CC ubiquitin ligase-proteasome pathway during jasmonate signaling.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SIMILARITY: Belongs to the TIFY/JAZ family. {ECO:0000305}.
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DR EMBL; AC118134; AAP03360.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96480.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12236.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84615.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ27256.1; -; Genomic_DNA.
DR EMBL; AK061842; BAG88142.1; -; mRNA.
DR EMBL; AK099557; BAG94191.1; -; mRNA.
DR RefSeq; XP_015630632.1; XM_015775146.1.
DR AlphaFoldDB; Q84R94; -.
DR SMR; Q84R94; -.
DR STRING; 4530.OS03T0402800-01; -.
DR PaxDb; Q84R94; -.
DR PRIDE; Q84R94; -.
DR EnsemblPlants; Os03t0402800-01; Os03t0402800-01; Os03g0402800.
DR GeneID; 4333065; -.
DR Gramene; Os03t0402800-01; Os03t0402800-01; Os03g0402800.
DR KEGG; osa:4333065; -.
DR eggNOG; ENOG502S303; Eukaryota.
DR HOGENOM; CLU_051749_1_1_1; -.
DR InParanoid; Q84R94; -.
DR OMA; MRNSRSM; -.
DR OrthoDB; 1280219at2759; -.
DR PlantReactome; R-OSA-5679411; Gibberellin signaling.
DR PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q84R94; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0031347; P:regulation of defense response; IBA:GO_Central.
DR GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IBA:GO_Central.
DR GO; GO:0009611; P:response to wounding; IBA:GO_Central.
DR InterPro; IPR018467; CCT_CS.
DR InterPro; IPR040390; TIFY/JAZ.
DR InterPro; IPR010399; Tify_dom.
DR PANTHER; PTHR33077; PTHR33077; 1.
DR Pfam; PF09425; Jas_motif; 1.
DR Pfam; PF06200; tify; 1.
DR SMART; SM00979; TIFY; 1.
DR PROSITE; PS51320; TIFY; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Ubl conjugation.
FT CHAIN 1..228
FT /note="Protein TIFY 10a"
FT /id="PRO_0000434848"
FT DOMAIN 75..110
FT /note="Tify"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00650"
FT REGION 175..228
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 164..189
FT /note="Jas"
FT /evidence="ECO:0000255"
FT MOTIF 166..173
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
SQ SEQUENCE 228 AA; 24085 MW; FA51A7ACF92BC4D8 CRC64;
MASAKSGERG SSSFAMACSL LSRYVRQNGA AAGELGLGIR GEADANKGKE TMELFPQNSG
FGSEAAAVKE TPDAREQEKR QLTIFYGGKV LVFDDFPAEK AKDLMQMASK SSSTAQNCVL
LPSSATATVA DNTKVSAVPA PASALPVAQA NAPKPVRPNA ADLPQARKAS LHRFLEKRKD
RLQAKAPYQG SPSDASPVKK ELQESQPWLG LGPQVAAPDL SLRQESSQ
