TI11C_ORYSJ
ID TI11C_ORYSJ Reviewed; 209 AA.
AC Q8GRS2; A0A0P0VTW6;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Protein TIFY 11c {ECO:0000305};
DE Short=OsTIFY11c {ECO:0000303|PubMed:19618278};
DE AltName: Full=Jasmonate ZIM domain-containing protein 11 {ECO:0000305};
DE Short=OsJAZ11 {ECO:0000303|PubMed:19618278};
DE AltName: Full=OsJAZ2;
GN Name=TIFY11C {ECO:0000303|PubMed:19618278};
GN Synonyms=JAZ11 {ECO:0000303|PubMed:19618278};
GN OrderedLocusNames=Os03g0180900 {ECO:0000312|EMBL:BAF11081.1},
GN LOC_Os03g08320 {ECO:0000312|EMBL:ABF94310.1};
GN ORFNames=OsJ_09657, OSJNBa0050H14.23 {ECO:0000312|EMBL:AAO13483.1},
GN OSJNBb0076N15.9 {ECO:0000312|EMBL:AAN65439.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, NOMENCLATURE, AND INDUCTION.
RX PubMed=19618278; DOI=10.1007/s11103-009-9524-8;
RA Ye H., Du H., Tang N., Li X., Xiong L.;
RT "Identification and expression profiling analysis of TIFY family genes
RT involved in stress and phytohormone responses in rice.";
RL Plant Mol. Biol. 71:291-305(2009).
RN [8]
RP INTERACTION WITH BHLH148, AND INDUCTION.
RX PubMed=21332845; DOI=10.1111/j.1365-313x.2010.04477.x;
RA Seo J.S., Joo J., Kim M.J., Kim Y.K., Nahm B.H., Song S.I., Cheong J.J.,
RA Lee J.S., Kim J.K., Choi Y.D.;
RT "OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins
RT in a jasmonate signaling pathway leading to drought tolerance in rice.";
RL Plant J. 65:907-921(2011).
RN [9]
RP INTERACTION WITH RSS3.
RC STRAIN=cv. Nipponbare;
RX PubMed=23715469; DOI=10.1105/tpc.113.112052;
RA Toda Y., Tanaka M., Ogawa D., Kurata K., Kurotani K., Habu Y., Ando T.,
RA Sugimoto K., Mitsuda N., Katoh E., Abe K., Miyao A., Hirochika H.,
RA Hattori T., Takeda S.;
RT "RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH
RT factors and regulates jasmonate-induced gene expression and root cell
RT elongation.";
RL Plant Cell 25:1709-1725(2013).
RN [10]
RP INTERACTION WITH COI1A; COI1B AND COI2.
RX PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA Do Choi Y.;
RT "Oryza sativa COI homologues restore jasmonate signal transduction in
RT Arabidopsis coi1-1 mutants.";
RL PLoS ONE 8:E52802-E52802(2013).
CC -!- FUNCTION: Repressor of jasmonate responses.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SUBUNIT: Interacts with BHLH148 (PubMed:21332845). Interacts with
CC COI1A, COI1B and COI2 in a coronatine-dependent manner. Coronatine is
CC an analog of jasmonoyl isoleucine (JA-Ile) (PubMed:23320078). Interacts
CC with RSS3 (PubMed:23715469). {ECO:0000269|PubMed:21332845,
CC ECO:0000269|PubMed:23320078, ECO:0000269|PubMed:23715469}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- INDUCTION: By methyl jasmonate (MeJA), and drought and salt stresses
CC (PubMed:21332845, PubMed:19618278). Induced by wounding
CC (PubMed:19618278). {ECO:0000269|PubMed:19618278,
CC ECO:0000269|PubMed:21332845}.
CC -!- DOMAIN: The jas domain (153-177) is required for interaction with COI1.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- PTM: Ubiquitinated. Targeted for degradation by the SCF(COI1) E3
CC ubiquitin ligase-proteasome pathway during jasmonate signaling.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SIMILARITY: Belongs to the TIFY/JAZ family. {ECO:0000305}.
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DR EMBL; AC125472; AAO13483.1; -; Genomic_DNA.
DR EMBL; AC126223; AAN65439.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF94310.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11081.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82623.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ25817.1; -; Genomic_DNA.
DR EMBL; AK073589; BAG93537.1; -; mRNA.
DR RefSeq; XP_015633146.1; XM_015777660.1.
DR AlphaFoldDB; Q8GRS2; -.
DR SMR; Q8GRS2; -.
DR STRING; 4530.OS03T0180900-01; -.
DR PaxDb; Q8GRS2; -.
DR PRIDE; Q8GRS2; -.
DR EnsemblPlants; Os03t0180900-01; Os03t0180900-01; Os03g0180900.
DR GeneID; 4331833; -.
DR Gramene; Os03t0180900-01; Os03t0180900-01; Os03g0180900.
DR KEGG; osa:4331833; -.
DR eggNOG; ENOG502RIU4; Eukaryota.
DR HOGENOM; CLU_051749_3_0_1; -.
DR InParanoid; Q8GRS2; -.
DR OMA; RQYMKEQ; -.
DR OrthoDB; 1280219at2759; -.
DR PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0031347; P:regulation of defense response; IBA:GO_Central.
DR GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IBA:GO_Central.
DR GO; GO:0009611; P:response to wounding; IBA:GO_Central.
DR InterPro; IPR018467; CCT_CS.
DR InterPro; IPR040390; TIFY/JAZ.
DR InterPro; IPR010399; Tify_dom.
DR PANTHER; PTHR33077; PTHR33077; 1.
DR Pfam; PF09425; Jas_motif; 1.
DR Pfam; PF06200; tify; 1.
DR SMART; SM00979; TIFY; 1.
DR PROSITE; PS51320; TIFY; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Ubl conjugation.
FT CHAIN 1..209
FT /note="Protein TIFY 11c"
FT /id="PRO_0000434856"
FT DOMAIN 93..128
FT /note="Tify"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00650"
FT REGION 175..209
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 153..177
FT /note="Jas"
FT /evidence="ECO:0000255"
FT MOTIF 155..162
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
FT COMPBIAS 175..196
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 209 AA; 22035 MW; C072262A4E52061E CRC64;
MAGSSEQQLV ANAAATTVAG NGSRFAVTCG LLRQYMKEHS GSNGGGGFLP AVTAMSLMTG
GADAEEEAPE VRKTMELFPQ QAGTLKDTQE RKEITEKAQL TIFYGGSVVV FDDFPAEKAG
ELMKLAGSRD STAAAAVSDA GAAAGQPCLP DMPIARKVSL QRFLEKRKNR IVVAEPLPES
EKKEAESSKR AKKDDGGASW LQVNPTLSL
