TI11D_ORYSJ
ID TI11D_ORYSJ Reviewed; 171 AA.
AC Q7XEZ1; A0A0P0XTU4;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Protein TIFY 11d {ECO:0000305};
DE Short=OsTIFY11d {ECO:0000303|PubMed:19618278};
DE AltName: Full=Jasmonate ZIM domain-containing protein 12 {ECO:0000305};
DE Short=OsJAZ12 {ECO:0000303|PubMed:19618278};
DE AltName: Full=OsJAZ1 {ECO:0000303|PubMed:21332845};
GN Name=TIFY11D {ECO:0000303|PubMed:19618278};
GN Synonyms=JAZ12 {ECO:0000303|PubMed:19618278};
GN OrderedLocusNames=Os10g0392400 {ECO:0000312|EMBL:BAF26427.1},
GN LOC_Os10g25290 {ECO:0000312|EMBL:AAP53568.1};
GN ORFNames=OsJ_31396 {ECO:0000312|EMBL:EAZ15950.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, NOMENCLATURE, AND INDUCTION.
RX PubMed=19618278; DOI=10.1007/s11103-009-9524-8;
RA Ye H., Du H., Tang N., Li X., Xiong L.;
RT "Identification and expression profiling analysis of TIFY family genes
RT involved in stress and phytohormone responses in rice.";
RL Plant Mol. Biol. 71:291-305(2009).
RN [8]
RP FUNCTION, INTERACTION WITH BHLH148 AND COI1A, AND PTM.
RX PubMed=21332845; DOI=10.1111/j.1365-313x.2010.04477.x;
RA Seo J.S., Joo J., Kim M.J., Kim Y.K., Nahm B.H., Song S.I., Cheong J.J.,
RA Lee J.S., Kim J.K., Choi Y.D.;
RT "OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins
RT in a jasmonate signaling pathway leading to drought tolerance in rice.";
RL Plant J. 65:907-921(2011).
RN [9]
RP INTERACTION WITH COI1A; COI1B AND COI2.
RX PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA Do Choi Y.;
RT "Oryza sativa COI homologues restore jasmonate signal transduction in
RT Arabidopsis coi1-1 mutants.";
RL PLoS ONE 8:E52802-E52802(2013).
CC -!- FUNCTION: Repressor of jasmonate (JA) responses (By similarity). May
CC act on an initial response of JA-regulated gene expression toward
CC drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex
CC (PubMed:21332845). {ECO:0000250|UniProtKB:Q7XPM8,
CC ECO:0000269|PubMed:21332845}.
CC -!- SUBUNIT: Interacts with BHLH148 and COI1A (PubMed:21332845). Interacts
CC with COI1A, COI1B and COI2 in a coronatine-dependent manner. Coronatine
CC is an analog of jasmonoyl isoleucine (JA-Ile) (PubMed:23320078).
CC {ECO:0000269|PubMed:21332845, ECO:0000269|PubMed:23320078}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- INDUCTION: By jasmonate, wounding, and cold, drought and salt stresses.
CC Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:19618278}.
CC -!- DOMAIN: The jas domain (117-142) is required for interaction with COI1.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- PTM: Ubiquitinated (Probable). Increase in jasmonoyl isoleucine (JA-
CC Ile) levels mediates its degradation via COI1A-mediated proteasome
CC pathway (PubMed:21332845). {ECO:0000269|PubMed:21332845,
CC ECO:0000305|PubMed:21332845}.
CC -!- SIMILARITY: Belongs to the TIFY/JAZ family. {ECO:0000305}.
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DR EMBL; DP000086; AAP53568.1; -; Genomic_DNA.
DR EMBL; AP008216; BAF26427.1; -; Genomic_DNA.
DR EMBL; AP014966; BAT10677.1; -; Genomic_DNA.
DR EMBL; CM000147; EAZ15950.1; -; Genomic_DNA.
DR EMBL; AK061602; BAG88033.1; -; mRNA.
DR RefSeq; XP_015613048.1; XM_015757562.1.
DR AlphaFoldDB; Q7XEZ1; -.
DR SMR; Q7XEZ1; -.
DR STRING; 4530.OS10T0392400-01; -.
DR PaxDb; Q7XEZ1; -.
DR PRIDE; Q7XEZ1; -.
DR EnsemblPlants; Os10t0392400-01; Os10t0392400-01; Os10g0392400.
DR GeneID; 4348533; -.
DR Gramene; Os10t0392400-01; Os10t0392400-01; Os10g0392400.
DR KEGG; osa:4348533; -.
DR eggNOG; ENOG502R4B9; Eukaryota.
DR HOGENOM; CLU_051749_3_0_1; -.
DR InParanoid; Q7XEZ1; -.
DR OMA; FYDGRMV; -.
DR OrthoDB; 1603744at2759; -.
DR PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR PlantReactome; R-OSA-6788019; Salicylic acid signaling.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0031347; P:regulation of defense response; IBA:GO_Central.
DR GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IBA:GO_Central.
DR GO; GO:0009611; P:response to wounding; IBA:GO_Central.
DR InterPro; IPR018467; CCT_CS.
DR InterPro; IPR040390; TIFY/JAZ.
DR InterPro; IPR010399; Tify_dom.
DR PANTHER; PTHR33077; PTHR33077; 1.
DR Pfam; PF09425; Jas_motif; 1.
DR Pfam; PF06200; tify; 1.
DR SMART; SM00979; TIFY; 1.
DR PROSITE; PS51320; TIFY; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Nucleus; Reference proteome;
KW Stress response; Transcription; Transcription regulation; Ubl conjugation.
FT CHAIN 1..171
FT /note="Protein TIFY 11d"
FT /id="PRO_0000434858"
FT DOMAIN 65..100
FT /note="Tify"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00650"
FT MOTIF 117..142
FT /note="Jas"
FT /evidence="ECO:0000255"
FT MOTIF 119..126
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
SQ SEQUENCE 171 AA; 18270 MW; F8D1831C628112C3 CRC64;
MAAAGSSSRF AVTCGLLSQY MRERQQPQPP VTVLEAVAEE EEEEDARTMQ LFPPRAAAAD
GVATPSAGTA PLTIFYDGRM VVVDDVPVEK AAELMRLAGS ACSPPQPAHA AALPEMPIAR
KASLQRFLQK RKHRITTTSE PYKKAAVASP APEKSFAVAP VKDEPATWLG L
