TI205_ARATH
ID TI205_ARATH Reviewed; 209 AA.
AC Q9FM67; Q8LBB6;
DT 19-OCT-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 97.
DE RecName: Full=Protein TIC 20-v, chloroplastic;
DE AltName: Full=Translocon at the inner envelope membrane of chloroplasts 20-V;
DE Short=AtTIC20-v;
DE Flags: Precursor;
GN Name=TIC20-V; OrderedLocusNames=At5g55710; ORFNames=MDF20.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP SUBCELLULAR LOCATION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND
RP DISRUPTION PHENOTYPE.
RX PubMed=21395885; DOI=10.1111/j.1365-313x.2011.04551.x;
RA Kasmati A.R., Toepel M., Patel R., Murtaza G., Jarvis P.;
RT "Molecular and genetic analyses of Tic20 homologues in Arabidopsis thaliana
RT chloroplasts.";
RL Plant J. 66:877-889(2011).
RN [6]
RP REVIEW.
RX PubMed=20100520; DOI=10.1016/j.bbamcr.2010.01.015;
RA Kovacs-Bogdan E., Soll J., Bolter B.;
RT "Protein import into chloroplasts: the Tic complex and its regulation.";
RL Biochim. Biophys. Acta 1803:740-747(2010).
CC -!- FUNCTION: May be involved in protein precursor import into
CC chloroplasts. Not redundant with TIC20-I, TIC20-II or TIC20-IV.
CC -!- SUBUNIT: Part of the Tic complex. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast inner membrane
CC {ECO:0000269|PubMed:21395885}; Multi-pass membrane protein
CC {ECO:0000269|PubMed:21395885}.
CC -!- TISSUE SPECIFICITY: Expressed in leaves, siliques and roots.
CC {ECO:0000269|PubMed:21395885}.
CC -!- DEVELOPMENTAL STAGE: Expressed throughout development.
CC {ECO:0000269|PubMed:21395885}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype.
CC {ECO:0000269|PubMed:21395885}.
CC -!- SIMILARITY: Belongs to the Tic20 family. {ECO:0000305}.
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DR EMBL; AB009050; BAB09238.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96671.1; -; Genomic_DNA.
DR EMBL; BT001996; AAN72007.1; -; mRNA.
DR EMBL; BT006255; AAP13363.1; -; mRNA.
DR EMBL; AY087311; AAM64862.1; -; mRNA.
DR RefSeq; NP_200382.1; NM_124953.1.
DR AlphaFoldDB; Q9FM67; -.
DR STRING; 3702.AT5G55710.1; -.
DR PaxDb; Q9FM67; -.
DR PRIDE; Q9FM67; -.
DR ProteomicsDB; 234373; -.
DR EnsemblPlants; AT5G55710.1; AT5G55710.1; AT5G55710.
DR GeneID; 835665; -.
DR Gramene; AT5G55710.1; AT5G55710.1; AT5G55710.
DR KEGG; ath:AT5G55710; -.
DR Araport; AT5G55710; -.
DR TAIR; locus:2162167; AT5G55710.
DR eggNOG; ENOG502QUSD; Eukaryota.
DR HOGENOM; CLU_094758_0_0_1; -.
DR InParanoid; Q9FM67; -.
DR OMA; AYAWIRY; -.
DR OrthoDB; 1441544at2759; -.
DR PhylomeDB; Q9FM67; -.
DR PRO; PR:Q9FM67; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FM67; baseline and differential.
DR Genevisible; Q9FM67; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009706; C:chloroplast inner membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009579; C:thylakoid; IDA:TAIR.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR InterPro; IPR005691; Tic20.
DR PANTHER; PTHR33510; PTHR33510; 1.
DR Pfam; PF16166; TIC20; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Membrane; Plastid; Plastid inner membrane; Protein transport;
KW Reference proteome; Transit peptide; Transmembrane; Transmembrane helix;
KW Transport.
FT TRANSIT 1..49
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 50..209
FT /note="Protein TIC 20-v, chloroplastic"
FT /id="PRO_0000413666"
FT TRANSMEM 63..83
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 103..123
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 132..152
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 173..193
FT /note="Helical"
FT /evidence="ECO:0000255"
FT CONFLICT 88
FT /note="Q -> H (in Ref. 4; AAM64862)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 209 AA; 23652 MW; 40F873A750826D10 CRC64;
MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS
DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA IRAFKSFPFN GFLIFITLYF
VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV
SLIYGFSACL FGLTPRLPLV AEAADRQVL
