TIF3_ORYSJ
ID TIF3_ORYSJ Reviewed; 216 AA.
AC Q7XPM8; B7E3P6; B7E3P7; Q0J9H0;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=Protein TIFY 3 {ECO:0000305};
DE Short=OsTIFY3 {ECO:0000303|PubMed:19618278};
DE AltName: Full=Jasmonate ZIM domain-containing protein 1 {ECO:0000305};
DE Short=OsJAZ1 {ECO:0000303|PubMed:19618278};
DE AltName: Full=OsJAZ10 {ECO:0000303|PubMed:23320078};
DE AltName: Full=Protein EXTRA GLUME 2 {ECO:0000303|PubMed:24647160};
GN Name=TIFY3 {ECO:0000303|PubMed:19618278};
GN Synonyms=EG2 {ECO:0000303|PubMed:24647160},
GN JAZ1 {ECO:0000303|PubMed:19618278};
GN OrderedLocusNames=Os04g0653000 {ECO:0000312|EMBL:BAF16017.1},
GN LOC_Os04g55920 {ECO:0000305};
GN ORFNames=OsJ_16440 {ECO:0000312|EMBL:EAZ32236.1},
GN OSJNBa0060D06.16 {ECO:0000312|EMBL:CAE03550.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 21-216.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, NOMENCLATURE, AND INDUCTION.
RX PubMed=19618278; DOI=10.1007/s11103-009-9524-8;
RA Ye H., Du H., Tang N., Li X., Xiong L.;
RT "Identification and expression profiling analysis of TIFY family genes
RT involved in stress and phytohormone responses in rice.";
RL Plant Mol. Biol. 71:291-305(2009).
RN [8]
RP INDUCTION BY JASMONATE.
RX PubMed=23104764; DOI=10.1093/pcp/pcs145;
RA Yamada S., Kano A., Tamaoki D., Miyamoto A., Shishido H., Miyoshi S.,
RA Taniguchi S., Akimitsu K., Gomi K.;
RT "Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight
RT in rice.";
RL Plant Cell Physiol. 53:2060-2072(2012).
RN [9]
RP INTERACTION WITH COI1B.
RX PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA Do Choi Y.;
RT "Oryza sativa COI homologues restore jasmonate signal transduction in
RT Arabidopsis coi1-1 mutants.";
RL PLoS ONE 8:E52802-E52802(2013).
RN [10]
RP FUNCTION, INTERACTION WITH COI1B AND MYC2, DOMAIN, TISSUE SPECIFICITY, PTM,
RP AND MUTAGENESIS OF ALA-172.
RX PubMed=24647160; DOI=10.1038/ncomms4476;
RA Cai Q., Yuan Z., Chen M., Yin C., Luo Z., Zhao X., Liang W., Hu J.,
RA Zhang D.;
RT "Jasmonic acid regulates spikelet development in rice.";
RL Nat. Commun. 5:3476-3476(2014).
CC -!- FUNCTION: Repressor of jasmonate responses negatively regulated by the
CC proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-
CC dependent manner. Involved in jasmonate (JA) signaling pathway during
CC spikelet development. Targets directly the transcription activator MYC2
CC and suppresses the activity of MYC2 in triggering the transcription of
CC MADS1 (PubMed:24647160). {ECO:0000269|PubMed:24647160}.
CC -!- SUBUNIT: Interacts with COI1B in a coronatine-dependent manner.
CC Coronatine is an analog of jasmonoyl isoleucine (JA-Ile)
CC (PubMed:23320078, PubMed:24647160). Interacts with MYC2
CC (PubMed:24647160). {ECO:0000269|PubMed:23320078,
CC ECO:0000269|PubMed:24647160}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems, leaves, spikelets and
CC seeds. {ECO:0000269|PubMed:24647160}.
CC -!- INDUCTION: By abscisic acid (ABA), wounding, and drought and salt
CC stresses (PubMed:19618278). Induced by jasmonate (JA)
CC (PubMed:23104764). Negatively regulated by the SCF(COI1) E3 ubiquitin
CC ligase-proteasome pathway during JA signaling (PubMed:24647160).
CC {ECO:0000269|PubMed:19618278, ECO:0000269|PubMed:23104764,
CC ECO:0000269|PubMed:24647160}.
CC -!- DOMAIN: The jas domain (170-194) is required for interaction with COI1.
CC {ECO:0000269|PubMed:24647160}.
CC -!- PTM: Ubiquitinated (Probable). Increase in jasmonoyl isoleucine (JA-
CC Ile) levels mediates its degradation via COI1B-mediated proteasome
CC pathway (PubMed:24647160). {ECO:0000269|PubMed:24647160,
CC ECO:0000305|PubMed:24647160}.
CC -!- SIMILARITY: Belongs to the TIFY/JAZ family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF16017.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAG86993.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAG86994.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAG91378.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAG91379.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL606690; CAE03550.1; -; Genomic_DNA.
DR EMBL; AP008210; BAF16017.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000141; EAZ32236.1; -; Genomic_DNA.
DR EMBL; AK059441; BAG86993.1; ALT_INIT; mRNA.
DR EMBL; AK059441; BAG86994.1; ALT_INIT; mRNA.
DR EMBL; AK069326; BAG91378.1; ALT_INIT; mRNA.
DR EMBL; AK069326; BAG91379.1; ALT_INIT; mRNA.
DR RefSeq; XP_015635690.1; XM_015780204.1.
DR AlphaFoldDB; Q7XPM8; -.
DR SMR; Q7XPM8; -.
DR STRING; 4530.OS04T0653000-01; -.
DR PaxDb; Q7XPM8; -.
DR PRIDE; Q7XPM8; -.
DR EnsemblPlants; Os04t0653000-01; Os04t0653000-01; Os04g0653000.
DR GeneID; 4337240; -.
DR Gramene; Os04t0653000-01; Os04t0653000-01; Os04g0653000.
DR KEGG; osa:4337240; -.
DR eggNOG; ENOG502S12Y; Eukaryota.
DR HOGENOM; CLU_088770_0_0_1; -.
DR InParanoid; Q7XPM8; -.
DR OrthoDB; 1501574at2759; -.
DR PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0010582; P:floral meristem determinacy; IMP:UniProtKB.
DR GO; GO:0048449; P:floral organ formation; IMP:UniProtKB.
DR GO; GO:0031347; P:regulation of defense response; IBA:GO_Central.
DR GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IMP:UniProtKB.
DR GO; GO:0009611; P:response to wounding; IBA:GO_Central.
DR InterPro; IPR018467; CCT_CS.
DR InterPro; IPR040390; TIFY/JAZ.
DR InterPro; IPR010399; Tify_dom.
DR PANTHER; PTHR33077; PTHR33077; 1.
DR Pfam; PF09425; Jas_motif; 1.
DR Pfam; PF06200; tify; 1.
DR SMART; SM00979; TIFY; 1.
DR PROSITE; PS51320; TIFY; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Ubl conjugation.
FT CHAIN 1..216
FT /note="Protein TIFY 3"
FT /id="PRO_0000434839"
FT DOMAIN 67..102
FT /note="Tify"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00650"
FT REGION 1..47
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 184..216
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 170..194
FT /note="Jas"
FT /evidence="ECO:0000255"
FT MOTIF 172..179
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
FT COMPBIAS 1..42
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MUTAGEN 172
FT /note="A->G: In eg2-1D; increased root length, extra glume-
FT like structures and altered floral organ numbers and
FT identities."
FT /evidence="ECO:0000269|PubMed:24647160"
SQ SEQUENCE 216 AA; 22931 MW; 32BFC280FF28AE9F CRC64;
MDLLEKKNIK KGGEVEEEVA RKGEERKEEE VVVEEKSHQQ QQQQGEEELV GLSLAGGRPK
VFPMSSPPPN PSQLTIFYGG SVCVYDSVPP EKAQAIMLIA AAAAAAASAT KSNAAIAVKP
PVMPAANATQ AAVSPVLTRS LSLQSTSVAT GQPQVAADPS SICKLQADLP IARRHSLQRF
LEKRRDRLVS KAPYPTKSSE GMEASGMEVT AEGKAQ
