TIF5B_ARATH
ID TIF5B_ARATH Reviewed; 148 AA.
AC O64687;
DT 11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-AUG-1998, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Protein TIFY 5B;
DE AltName: Full=Jasmonate ZIM domain-containing protein 7;
GN Name=TIFY 5B; Synonyms=JAZ7; OrderedLocusNames=At2g34600;
GN ORFNames=T31E10.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP INDUCTION BY JASMONATE.
RX PubMed=17637677; DOI=10.1038/nature05960;
RA Thines B., Katsir L., Melotto M., Niu Y., Mandaokar A., Liu G., Nomura K.,
RA He S.Y., Howe G.A., Browse J.;
RT "JAZ repressor proteins are targets of the SCF(COI1) complex during
RT jasmonate signalling.";
RL Nature 448:661-665(2007).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17637675; DOI=10.1038/nature06006;
RA Chini A., Fonseca S., Fernandez G., Adie B., Chico J.M., Lorenzo O.,
RA Garcia-Casado G., Lopez-Vidriero I., Lozano F.M., Ponce M.R., Micol J.L.,
RA Solano R.;
RT "The JAZ family of repressors is the missing link in jasmonate
RT signalling.";
RL Nature 448:666-671(2007).
RN [6]
RP DOMAIN.
RX PubMed=17675405; DOI=10.1105/tpc.107.050708;
RA Yan Y., Stolz S., Chetelat A., Reymond P., Pagni M., Dubugnon L.,
RA Farmer E.E.;
RT "A downstream mediator in the growth repression limb of the jasmonate
RT pathway.";
RL Plant Cell 19:2470-2483(2007).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17499004; DOI=10.1016/j.tplants.2007.04.004;
RA Vanholme B., Grunewald W., Bateman A., Kohchi T., Gheysen G.;
RT "The tify family previously known as ZIM.";
RL Trends Plant Sci. 12:239-244(2007).
RN [8]
RP INDUCTION BY WOUNDING AND HERBIVORY.
RX PubMed=18223147; DOI=10.1104/pp.107.115691;
RA Chung H.S., Koo A.J., Gao X., Jayanty S., Thines B., Jones A.D., Howe G.A.;
RT "Regulation and function of Arabidopsis JASMONATE ZIM-domain genes in
RT response to wounding and herbivory.";
RL Plant Physiol. 146:952-964(2008).
CC -!- FUNCTION: Repressor of jasmonate responses.
CC {ECO:0000250|UniProtKB:Q9M246}.
CC -!- INTERACTION:
CC O64687; O49687: MYC4; NbExp=3; IntAct=EBI-15403807, EBI-15406909;
CC O64687; Q9C9L2: TCP15; NbExp=3; IntAct=EBI-15403807, EBI-4426144;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- INDUCTION: Up-regulated by jasmonate, wounding and herbivory.
CC {ECO:0000269|PubMed:17637677, ECO:0000269|PubMed:18223147}.
CC -!- DOMAIN: The jas domain (120-144) is required for interaction with COI1.
CC {ECO:0000250}.
CC -!- PTM: Ubiquitinated. Targeted for degradation by the SCF(COI1) E3
CC ubiquitin ligase-proteasome pathway during jasmonate signaling.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SIMILARITY: Belongs to the TIFY/JAZ family. {ECO:0000305}.
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DR EMBL; AC004077; AAC26695.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08997.1; -; Genomic_DNA.
DR EMBL; BT010666; AAR20723.1; -; mRNA.
DR EMBL; BT010963; AAR24741.1; -; mRNA.
DR PIR; F84758; F84758.
DR RefSeq; NP_181007.1; NM_129014.4.
DR AlphaFoldDB; O64687; -.
DR SMR; O64687; -.
DR BioGRID; 3371; 10.
DR DIP; DIP-60684N; -.
DR IntAct; O64687; 10.
DR STRING; 3702.AT2G34600.1; -.
DR PaxDb; O64687; -.
DR PRIDE; O64687; -.
DR EnsemblPlants; AT2G34600.1; AT2G34600.1; AT2G34600.
DR GeneID; 818025; -.
DR Gramene; AT2G34600.1; AT2G34600.1; AT2G34600.
DR KEGG; ath:AT2G34600; -.
DR Araport; AT2G34600; -.
DR TAIR; locus:2062345; AT2G34600.
DR HOGENOM; CLU_113486_0_0_1; -.
DR InParanoid; O64687; -.
DR OMA; FYNGHIC; -.
DR OrthoDB; 1537989at2759; -.
DR PhylomeDB; O64687; -.
DR PRO; PR:O64687; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O64687; baseline and differential.
DR Genevisible; O64687; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0031347; P:regulation of defense response; IBA:GO_Central.
DR GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IBA:GO_Central.
DR GO; GO:0009753; P:response to jasmonic acid; IEP:TAIR.
DR GO; GO:0009611; P:response to wounding; IBA:GO_Central.
DR InterPro; IPR040390; TIFY/JAZ.
DR InterPro; IPR010399; Tify_dom.
DR PANTHER; PTHR33077; PTHR33077; 1.
DR Pfam; PF06200; tify; 1.
DR SMART; SM00979; TIFY; 1.
DR PROSITE; PS51320; TIFY; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Nucleus; Plant defense;
KW Reference proteome; Transcription; Transcription regulation;
KW Ubl conjugation.
FT CHAIN 1..148
FT /note="Protein TIFY 5B"
FT /id="PRO_0000300646"
FT DOMAIN 54..89
FT /note="Tify"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00650"
SQ SEQUENCE 148 AA; 16974 MW; 977A05AB0C57C330 CRC64;
MIIIIKNCDK PLLNFKEMEM QTKCDLELRL LTSSYDSDFH SSLDESSSSE ISQPKQESQI
LTIFYNGHMC VSSDLTHLEA NAILSLASRD VEEKSLSLRS SDGSDPPTIP NNSTRFHYQK
ASMKRSLHSF LQKRSLRIQA TSPYHRYR
