TIF6A_ORYSJ
ID TIF6A_ORYSJ Reviewed; 427 AA.
AC Q6ZJU3; A0A0P0XG63;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=Protein TIFY 6a {ECO:0000305};
DE Short=OsTIFY6a {ECO:0000303|PubMed:19618278};
DE AltName: Full=Jasmonate ZIM domain-containing protein 3 {ECO:0000305};
DE Short=OsJAZ3 {ECO:0000303|PubMed:19618278};
DE AltName: Full=OsJAZ9 {ECO:0000303|PubMed:21332845};
GN Name=TIFY6A {ECO:0000303|PubMed:19618278};
GN Synonyms=JAZ3 {ECO:0000303|PubMed:19618278};
GN OrderedLocusNames=Os08g0428400 {ECO:0000312|EMBL:BAF23763.1},
GN LOC_Os08g33160 {ECO:0000305};
GN ORFNames=OJ1663_D06.22 {ECO:0000312|EMBL:BAD01195.1},
GN OsJ_27393 {ECO:0000312|EMBL:EEE68725.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=18987217; DOI=10.1104/pp.108.128579;
RA Yilmaz A., Nishiyama M.Y., Fuentes B.G., Souza G.M., Janies D., Gray J.,
RA Grotewold E.;
RT "GRASSIUS: a platform for comparative regulatory genomics across the
RT grasses.";
RL Plant Physiol. 149:171-180(2009).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP GENE FAMILY, NOMENCLATURE, AND INDUCTION.
RX PubMed=19618278; DOI=10.1007/s11103-009-9524-8;
RA Ye H., Du H., Tang N., Li X., Xiong L.;
RT "Identification and expression profiling analysis of TIFY family genes
RT involved in stress and phytohormone responses in rice.";
RL Plant Mol. Biol. 71:291-305(2009).
RN [7]
RP INTERACTION WITH COI1A, AND INDUCTION.
RX PubMed=21332845; DOI=10.1111/j.1365-313x.2010.04477.x;
RA Seo J.S., Joo J., Kim M.J., Kim Y.K., Nahm B.H., Song S.I., Cheong J.J.,
RA Lee J.S., Kim J.K., Choi Y.D.;
RT "OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins
RT in a jasmonate signaling pathway leading to drought tolerance in rice.";
RL Plant J. 65:907-921(2011).
RN [8]
RP INTERACTION WITH COI1A AND COI1B.
RX PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA Do Choi Y.;
RT "Oryza sativa COI homologues restore jasmonate signal transduction in
RT Arabidopsis coi1-1 mutants.";
RL PLoS ONE 8:E52802-E52802(2013).
CC -!- FUNCTION: Repressor of jasmonate responses.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SUBUNIT: Interacts with COI1A (PubMed:21332845). Interacts with COI1A
CC and COI1B in a coronatine-dependent manner. Coronatine is an analog of
CC jasmonoyl isoleucine (JA-Ile) (PubMed:23320078).
CC {ECO:0000269|PubMed:21332845, ECO:0000269|PubMed:23320078}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- INDUCTION: By methyl jasmonate (MeJA) (PubMed:21332845). Induced by
CC abscisic acid (ABA), and drought and salt stresses (PubMed:19618278).
CC {ECO:0000269|PubMed:19618278, ECO:0000269|PubMed:21332845}.
CC -!- DOMAIN: The jas domain (343-367) is required for interaction with COI1.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- PTM: Ubiquitinated. Targeted for degradation by the SCF(COI1) E3
CC ubiquitin ligase-proteasome pathway during jasmonate signaling.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SIMILARITY: Belongs to the TIFY/JAZ family. {ECO:0000305}.
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DR EMBL; HQ858803; ADX60215.1; -; mRNA.
DR EMBL; AP003898; BAD01195.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF23763.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT05529.1; -; Genomic_DNA.
DR EMBL; CM000145; EEE68725.1; -; Genomic_DNA.
DR RefSeq; XP_015651050.1; XM_015795564.1.
DR AlphaFoldDB; Q6ZJU3; -.
DR SMR; Q6ZJU3; -.
DR STRING; 4530.OS08T0428400-01; -.
DR PaxDb; Q6ZJU3; -.
DR PRIDE; Q6ZJU3; -.
DR EnsemblPlants; Os08t0428400-01; Os08t0428400-01; Os08g0428400.
DR GeneID; 4345625; -.
DR Gramene; Os08t0428400-01; Os08t0428400-01; Os08g0428400.
DR KEGG; osa:4345625; -.
DR eggNOG; ENOG502QQDB; Eukaryota.
DR HOGENOM; CLU_047894_1_0_1; -.
DR InParanoid; Q6ZJU3; -.
DR OMA; AFMSFRS; -.
DR OrthoDB; 1055787at2759; -.
DR PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR ExpressionAtlas; Q6ZJU3; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0031347; P:regulation of defense response; IBA:GO_Central.
DR GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IBA:GO_Central.
DR GO; GO:0009611; P:response to wounding; IBA:GO_Central.
DR InterPro; IPR018467; CCT_CS.
DR InterPro; IPR040390; TIFY/JAZ.
DR InterPro; IPR010399; Tify_dom.
DR PANTHER; PTHR33077; PTHR33077; 1.
DR Pfam; PF09425; Jas_motif; 1.
DR Pfam; PF06200; tify; 1.
DR SMART; SM00979; TIFY; 1.
DR PROSITE; PS51320; TIFY; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Ubl conjugation.
FT CHAIN 1..427
FT /note="Protein TIFY 6a"
FT /id="PRO_0000434842"
FT DOMAIN 196..231
FT /note="Tify"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00650"
FT REGION 1..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 128..154
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 296..327
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 361..427
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 343..367
FT /note="Jas"
FT /evidence="ECO:0000255"
FT MOTIF 345..352
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
FT COMPBIAS 1..25
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 365..427
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 427 AA; 44850 MW; 534C9C5D5A8D8B89 CRC64;
MERDFLGAIW RKEEAAGKPE EHSDYRGGGG GASAAMQWQF PATKVGAASS AFMSFRSSAA
AAREEDPKEA AVFDRFSLSG FRPPPRPSPG DAFDGAAAMK QRQFGFNGRQ QYAAAAQHGH
REQGVDSYGV AAPHHFPSPS PSPRHPVPFG HANPMLRVHS LPNVAGGSPY RNQSFSVGNS
VAGSTVGVYG GPRDLQNPKV TQMTIFYDGL VNVFDNIPVE KAQELMLLAS RASIPSPPSA
ARKSDSPISA AAKLTVPEAL PARQIVVQKP EASVPLVSGV SNPITIVSQA VTLPKSFSSS
NDSAGPKSGG LPLAVTPLSQ ASPSQPIPVA TTNASAIMPR AVPQARKASL ARFLEKRKER
VSSVAPYPSS KSPLESSDTI GSPSTPSKSS CTDITPSTNN CEDSLCLGQP RNISFSSQEP
PSTKLQI
