TIF6B_ORYSJ
ID TIF6B_ORYSJ Reviewed; 416 AA.
AC Q6ES51; A0A0P0XLY1;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 16-AUG-2004, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Protein TIFY 6b {ECO:0000305};
DE Short=OsTIFY6b {ECO:0000303|PubMed:19618278};
DE AltName: Full=Jasmonate ZIM domain-containing protein 4 {ECO:0000305};
DE Short=OsJAZ4 {ECO:0000303|PubMed:19618278};
DE AltName: Full=OsJAZ8 {ECO:0000303|PubMed:21332845};
GN Name=TIFY6B {ECO:0000303|PubMed:19618278};
GN Synonyms=JAZ4 {ECO:0000303|PubMed:19618278};
GN OrderedLocusNames=Os09g0401300 {ECO:0000312|EMBL:BAF25035.1},
GN LOC_Os09g23660;
GN ORFNames=OsJ_29291 {ECO:0000312|EMBL:EEE69666.1},
GN P0650H04.35-1 {ECO:0000312|EMBL:BAD28519.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, NOMENCLATURE, AND INDUCTION.
RX PubMed=19618278; DOI=10.1007/s11103-009-9524-8;
RA Ye H., Du H., Tang N., Li X., Xiong L.;
RT "Identification and expression profiling analysis of TIFY family genes
RT involved in stress and phytohormone responses in rice.";
RL Plant Mol. Biol. 71:291-305(2009).
RN [7]
RP INTERACTION WITH COI1A, AND INDUCTION.
RX PubMed=21332845; DOI=10.1111/j.1365-313x.2010.04477.x;
RA Seo J.S., Joo J., Kim M.J., Kim Y.K., Nahm B.H., Song S.I., Cheong J.J.,
RA Lee J.S., Kim J.K., Choi Y.D.;
RT "OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins
RT in a jasmonate signaling pathway leading to drought tolerance in rice.";
RL Plant J. 65:907-921(2011).
RN [8]
RP INTERACTION WITH COI1A AND COI1B, AND TISSUE SPECIFICITY.
RX PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA Do Choi Y.;
RT "Oryza sativa COI homologues restore jasmonate signal transduction in
RT Arabidopsis coi1-1 mutants.";
RL PLoS ONE 8:E52802-E52802(2013).
CC -!- FUNCTION: Repressor of jasmonate responses.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SUBUNIT: Interacts with COI1A (PubMed:21332845). Interacts with COI1A
CC and COI1B in a coronatine-dependent manner. Coronatine is an analog of
CC jasmonoyl isoleucine (JA-Ile) (PubMed:23320078).
CC {ECO:0000269|PubMed:21332845, ECO:0000269|PubMed:23320078}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, shoots, leaf sheaths and leaf
CC blades. {ECO:0000269|PubMed:23320078}.
CC -!- INDUCTION: By methyl jasmonate (MeJA) (PubMed:21332845). Induced by
CC drought and salt stresses (PubMed:19618278).
CC {ECO:0000269|PubMed:19618278, ECO:0000269|PubMed:21332845}.
CC -!- DOMAIN: The jas domain (335-359) is required for interaction with COI1.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- PTM: Ubiquitinated. Targeted for degradation by the SCF(COI1) E3
CC ubiquitin ligase-proteasome pathway during jasmonate signaling.
CC {ECO:0000250|UniProtKB:Q7XPM8}.
CC -!- SIMILARITY: Belongs to the TIFY/JAZ family. {ECO:0000305}.
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DR EMBL; AP005321; BAD28519.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF25035.1; -; Genomic_DNA.
DR EMBL; AP014965; BAT07974.1; -; Genomic_DNA.
DR EMBL; CM000146; EEE69666.1; -; Genomic_DNA.
DR EMBL; AK065170; BAG89397.1; -; mRNA.
DR RefSeq; XP_015612402.1; XM_015756916.1.
DR AlphaFoldDB; Q6ES51; -.
DR SMR; Q6ES51; -.
DR STRING; 4530.OS09T0401300-01; -.
DR PaxDb; Q6ES51; -.
DR PRIDE; Q6ES51; -.
DR EnsemblPlants; Os09t0401300-01; Os09t0401300-01; Os09g0401300.
DR GeneID; 4347000; -.
DR Gramene; Os09t0401300-01; Os09t0401300-01; Os09g0401300.
DR KEGG; osa:4347000; -.
DR eggNOG; ENOG502QQDB; Eukaryota.
DR HOGENOM; CLU_047894_1_0_1; -.
DR InParanoid; Q6ES51; -.
DR OMA; HKSFISP; -.
DR OrthoDB; 1055787at2759; -.
DR PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR PlantReactome; R-OSA-6788019; Salicylic acid signaling.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000007752; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR ExpressionAtlas; Q6ES51; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0031347; P:regulation of defense response; IBA:GO_Central.
DR GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IBA:GO_Central.
DR GO; GO:0009611; P:response to wounding; IBA:GO_Central.
DR InterPro; IPR018467; CCT_CS.
DR InterPro; IPR040390; TIFY/JAZ.
DR InterPro; IPR010399; Tify_dom.
DR PANTHER; PTHR33077; PTHR33077; 1.
DR Pfam; PF09425; Jas_motif; 1.
DR Pfam; PF06200; tify; 1.
DR SMART; SM00979; TIFY; 1.
DR PROSITE; PS51320; TIFY; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Ubl conjugation.
FT CHAIN 1..416
FT /note="Protein TIFY 6b"
FT /id="PRO_0000434844"
FT DOMAIN 187..222
FT /note="Tify"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00650"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 283..319
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 357..416
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 335..359
FT /note="Jas"
FT /evidence="ECO:0000255"
FT MOTIF 337..344
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
FT COMPBIAS 283..306
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 367..416
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 416 AA; 43612 MW; E8338CFE76DA45AB CRC64;
MERDFLGAIG KDEEQRRHAE ERKESDYFGA GGGAAAAAMD WSFASRAALM SFRSSSSAAA
AAAREETREL AFPHFSALDG AKMQQASHVL ARQKSFGAES HGIPQYAAAA AVHGAHRGQP
PHVLNGARVI PASSPFNPNN PMFRVQSSPN LPNAVGAGGG AFKQPPFAMG NAVAGSTVGV
YGTRDMPKAK AAQLTIFYAG SVNVFNNVSP EKAQELMFLA SRGSLPSAPT TVARMPEAHV
FPPAKVTVPE VSPTKPMMLQ KPQLVSSPVP AISKPISVVS QATSLPRSAS SSNVDSNVTK
SSGPLVVPPT SLPPPAQPET LATTTAAAIM PRAVPQARKA SLARFLEKRK ERVTTVAPYP
LAKSPLESSD TMGSANDNKS SCTDIALSSN RDESLSLGQP RTISFCEESP STKLQI
