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TIM_MOUSE
ID   TIM_MOUSE               Reviewed;        1197 AA.
AC   Q9R1X4; Q63ZX9; Q6P204; Q6PDL4; Q7TPV8; Q8R0Q2; Q9R268; Q9Z0E7;
DT   15-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT   15-MAR-2005, sequence version 3.
DT   03-AUG-2022, entry version 152.
DE   RecName: Full=Protein timeless homolog;
DE            Short=mTim;
GN   Name=Timeless {ECO:0000312|MGI:MGI:1321393};
GN   Synonyms=Tim1 {ECO:0000312|EMBL:BAA36500.1},
GN   Timeless1 {ECO:0000303|PubMed:9891984};
OS   Mus musculus (Mouse).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
OX   NCBI_TaxID=10090;
RN   [1] {ECO:0000312|EMBL:BAA36500.1}
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, AND
RP   DEVELOPMENTAL STAGE.
RC   STRAIN=BALB/cJ {ECO:0000312|EMBL:BAA36500.1}; TISSUE=Brain;
RX   PubMed=9891984; DOI=10.1016/s0014-5793(98)01597-x;
RA   Koike N., Hida A., Numano R., Hirose M., Sakaki Y., Tei H.;
RT   "Identification of the mammalian homologues of the Drosophila timeless
RT   gene, Timeless1.";
RL   FEBS Lett. 441:427-431(1998).
RN   [2] {ECO:0000312|EMBL:AAC80010.1}
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 6), TISSUE SPECIFICITY,
RP   DEVELOPMENTAL STAGE, FUNCTION, AND INTERACTION WITH PER1 AND PER2.
RC   TISSUE=Embryo;
RX   PubMed=9856465; DOI=10.1016/s0896-6273(00)80627-3;
RA   Sangoram A.M., Saez L., Antoch M.P., Gekakis N., Staknis D., Whiteley A.,
RA   Fruechte E.M., Vitaterna M.H., Shimomura K., King D.P., Young M.W.,
RA   Weitz C.J., Takahashi J.S.;
RT   "Mammalian circadian autoregulatory loop: a timeless ortholog and mPer1
RT   interact and negatively regulate CLOCK-ARTNL/BMAL1-induced transcription.";
RL   Neuron 21:1101-1113(1998).
RN   [3] {ECO:0000312|EMBL:AAC79687.1}
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND TISSUE SPECIFICITY.
RC   STRAIN=C57BL/6J; TISSUE=Brain;
RX   PubMed=9856466; DOI=10.1016/s0896-6273(00)80628-5;
RA   Zylka M.J., Shearman L.P., Levine J.D., Jin X., Weaver D.R., Reppert S.M.;
RT   "Molecular analysis of mammalian timeless.";
RL   Neuron 21:1115-1122(1998).
RN   [4] {ECO:0000312|EMBL:BAA76390.2}
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SUBCELLULAR LOCATION, TISSUE
RP   SPECIFICITY, INDUCTION, AND INTERACTION WITH PER1.
RC   STRAIN=BALB/cJ; TISSUE=Brain;
RX   PubMed=10231394; DOI=10.1046/j.1365-2443.1999.00238.x;
RA   Takumi T., Nagamine Y., Miyake S., Matsubara C., Taguchi K., Takekida S.,
RA   Sakakida Y., Nishikawa K., Kishimoto T., Niwa S., Okumura K., Okamura H.;
RT   "A mammalian ortholog of Drosophila timeless, highly expressed in SCN and
RT   retina, forms a complex with mPER1.";
RL   Genes Cells 4:67-75(1999).
RN   [5] {ECO:0000312|EMBL:AAD24467.1}
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 4), FUNCTION, TISSUE SPECIFICITY, AND
RP   DEVELOPMENTAL STAGE.
RC   TISSUE=Heart {ECO:0000312|EMBL:AAD24467.1}, and Kidney;
RX   PubMed=10963667; DOI=10.1073/pnas.97.18.10038;
RA   Li Z., Stuart R.O., Qiao J., Pavlova A., Bush K.T., Pohl M., Sakurai H.,
RA   Nigam S.K.;
RT   "A role for Timeless in epithelial morphogenesis during kidney
RT   development.";
RL   Proc. Natl. Acad. Sci. U.S.A. 97:10038-10043(2000).
RN   [6] {ECO:0000312|EMBL:AAH82770.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2; 3 AND 5).
RC   STRAIN=C57BL/6J {ECO:0000312|EMBL:AAH52884.1, ECO:0000312|EMBL:AAH58641.1},
RC   and FVB/N {ECO:0000312|EMBL:AAH26526.1};
RC   TISSUE=Brain {ECO:0000312|EMBL:AAH58641.1},
RC   Egg {ECO:0000312|EMBL:AAH52884.1},
RC   Olfactory epithelium {ECO:0000312|EMBL:AAH82770.1}, and
RC   Salivary gland {ECO:0000312|EMBL:AAH26526.1};
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [7]
RP   INTERACTION WITH CRY1 AND CRY2, FUNCTION, SUBCELLULAR LOCATION, TISSUE
RP   SPECIFICITY, AND INDUCTION.
RX   PubMed=10428031; DOI=10.1016/s0092-8674(00)81014-4;
RA   Kume K., Zylka M.J., Sriram S., Shearman L.P., Weaver D.R., Jin X.,
RA   Maywood E.S., Hastings M.H., Reppert S.M.;
RT   "mCRY1 and mCRY2 are essential components of the negative limb of the
RT   circadian clock feedback loop.";
RL   Cell 98:193-205(1999).
RN   [8]
RP   INTERACTION WITH TIPIN, DEVELOPMENTAL STAGE, SUBUNIT, AND FUNCTION.
RX   PubMed=12875843; DOI=10.1016/s0022-2836(03)00633-8;
RA   Gotter A.L.;
RT   "Tipin, a novel timeless-interacting protein, is developmentally co-
RT   expressed with timeless and disrupts its self-association.";
RL   J. Mol. Biol. 331:167-176(2003).
RN   [9]
RP   INTERACTION WITH PER1; PER2 AND PER3, AND INDUCTION.
RX   PubMed=14564007; DOI=10.1126/science.1086593;
RA   Barnes J.W., Tischkau S.A., Barnes J.A., Mitchell J.W., Burgoon P.W.,
RA   Hickok J.R., Gillette M.U.;
RT   "Requirement of mammalian Timeless for circadian rhythmicity.";
RL   Science 302:439-442(2003).
RN   [10]
RP   ERRATUM OF PUBMED:14564007.
RA   Barnes J.W., Tischkau S.A., Barnes J.A., Mitchell J.W., Burgoon P.W.,
RA   Hickok J.R., Gillette M.U.;
RL   Science 302:1153-1153(2003).
RN   [11]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Spleen, and Testis;
RX   PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
RA   Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
RA   Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
RT   "A tissue-specific atlas of mouse protein phosphorylation and expression.";
RL   Cell 143:1174-1189(2010).
RN   [12]
RP   FUNCTION, SUBUNIT, INDUCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND
RP   INTERACTION WITH CRY1 AND CHEK1.
RX   PubMed=23418588; DOI=10.1371/journal.pone.0056623;
RA   Engelen E., Janssens R.C., Yagita K., Smits V.A., van der Horst G.T.,
RA   Tamanini F.;
RT   "Mammalian TIMELESS is involved in period determination and DNA damage-
RT   dependent phase advancing of the circadian clock.";
RL   PLoS ONE 8:E56623-E56623(2013).
RN   [13]
RP   INTERACTION WITH CRY1, AND SUBCELLULAR LOCATION.
RX   PubMed=24489120; DOI=10.1093/nar/gku094;
RA   Kang T.H., Leem S.H.;
RT   "Modulation of ATR-mediated DNA damage checkpoint response by cryptochrome
RT   1.";
RL   Nucleic Acids Res. 42:4427-4434(2014).
CC   -!- FUNCTION: Plays an important role in the control of DNA replication,
CC       maintenance of replication fork stability, maintenance of genome
CC       stability throughout normal DNA replication, DNA repair and in the
CC       regulation of the circadian clock (PubMed:9856465, PubMed:23418588,
CC       PubMed:10428031, PubMed:12875843). Required to stabilize replication
CC       forks during DNA replication by forming a complex with TIPIN: this
CC       complex regulates DNA replication processes under both normal and
CC       stress conditions, stabilizes replication forks and influences both
CC       CHEK1 phosphorylation and the intra-S phase checkpoint in response to
CC       genotoxic stress (PubMed:12875843). TIMELESS promotes TIPIN nuclear
CC       localization (PubMed:12875843). Involved in cell survival after DNA
CC       damage or replication stress by promoting DNA repair (PubMed:12875843).
CC       In response to double-strand breaks (DSBs), accumulates at DNA damage
CC       sites and promotes homologous recombination repair via its interaction
CC       with PARP1 (By similarity). May be specifically required for the ATR-
CC       CHEK1 pathway in the replication checkpoint induced by hydroxyurea or
CC       ultraviolet light (PubMed:23418588). Involved in the determination of
CC       period length and in the DNA damage-dependent phase advancing of the
CC       circadian clock (PubMed:23418588, PubMed:10428031). Negatively
CC       regulates CLOCK|NPAS2-ARTNL/BMAL1|ARTNL2/BMAL2-induced transactivation
CC       of PER1 possibly via translocation of PER1 into the nucleus
CC       (PubMed:9856465). May also play an important role in epithelial cell
CC       morphogenesis and formation of branching tubules (PubMed:10963667).
CC       {ECO:0000250|UniProtKB:Q9UNS1, ECO:0000269|PubMed:10428031,
CC       ECO:0000269|PubMed:10963667, ECO:0000269|PubMed:12875843,
CC       ECO:0000269|PubMed:23418588, ECO:0000269|PubMed:9856465}.
CC   -!- SUBUNIT: Homodimer or homomultimer (PubMed:12875843, PubMed:23418588).
CC       Component of the circadian core oscillator, which includes the CRY
CC       proteins, CLOCK or NPAS2, ARTNL/BMAL1 or ARTNL2/BMAL2, CSKN1D and/or
CC       CSNK1E, TIMELESS, and the PER proteins (PubMed:9856465). Interacts
CC       directly with PER2; the interaction with PER2 is via its second PAS
CC       domain (PubMed:14564007). Interacts directly with PER1 and PER3
CC       (PubMed:9856465, PubMed:10231394, PubMed:14564007). Interacts with CRY1
CC       (PubMed:10428031, PubMed:23418588, PubMed:24489120). Interacts with
CC       CRY2 (PubMed:10428031). Interacts with CHEK1, ATR and ATRIP (By
CC       similarity). Interacts with CLSPN (By similarity). Interacts with TIPIN
CC       (PubMed:12875843). Interacts with DDX11; this interaction increases
CC       recruitment of both proteins onto chromatin in response to replication
CC       stress induction by hydroxyurea (By similarity). Interacts with PARP1;
CC       interaction is direct and independent of poly-ADP-ribose (By
CC       similarity). {ECO:0000250|UniProtKB:Q9UNS1,
CC       ECO:0000269|PubMed:10231394, ECO:0000269|PubMed:10428031,
CC       ECO:0000269|PubMed:12875843, ECO:0000269|PubMed:14564007,
CC       ECO:0000269|PubMed:23418588, ECO:0000269|PubMed:24489120,
CC       ECO:0000269|PubMed:9856465}.
CC   -!- INTERACTION:
CC       Q9R1X4; O35973: Per1; NbExp=3; IntAct=EBI-1793117, EBI-1266764;
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:10231394,
CC       ECO:0000269|PubMed:10428031, ECO:0000269|PubMed:23418588,
CC       ECO:0000269|PubMed:24489120}. Chromosome
CC       {ECO:0000250|UniProtKB:Q9UNS1}. Note=In response to double-strand
CC       breaks (DSBs), accumulates at DNA damage sites via its interaction with
CC       PARP1. {ECO:0000250|UniProtKB:Q9UNS1}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=6;
CC       Name=1 {ECO:0000269|PubMed:10231394, ECO:0000269|PubMed:9856465,
CC       ECO:0000269|PubMed:9856466, ECO:0000269|PubMed:9891984};
CC         IsoId=Q9R1X4-1; Sequence=Displayed;
CC       Name=2 {ECO:0000305};
CC         IsoId=Q9R1X4-2; Sequence=VSP_051695;
CC       Name=3 {ECO:0000305};
CC         IsoId=Q9R1X4-3; Sequence=VSP_051695, VSP_051696;
CC       Name=4 {ECO:0000269|PubMed:10963667}; Synonyms=TIM-s;
CC         IsoId=Q9R1X4-4; Sequence=VSP_051694, VSP_051695;
CC       Name=5 {ECO:0000305};
CC         IsoId=Q9R1X4-5; Sequence=VSP_051694;
CC       Name=6 {ECO:0000269|PubMed:9856465};
CC         IsoId=Q9R1X4-6; Sequence=VSP_051697;
CC   -!- TISSUE SPECIFICITY: Predominantly and robustly expressed in
CC       proliferative organs (spleen, thymus, intestine and testis) compared to
CC       those more differentiated such as kidney and liver (at protein level).
CC       Expressed in all tissues examined including brain, heart, lung, liver,
CC       skeletal muscle, kidney, placenta, pancreas, spleen, thymus and testis.
CC       Strongly expressed in the suprachiasmatic nucleus (SCN) and pars
CC       tuberalis, moderately in the cingulate cortex, pyrimidal cell layer of
CC       the piriform cortex, periventricular part of the caudate putamen, and
CC       granular layer of the cerebellum, and weakly in the cerebral cortex,
CC       gyrus dentatus, hippocampus and thalamic nuclei. In embryonic kidney,
CC       expression is highest in regions of active ureteric bud cell branching.
CC       {ECO:0000269|PubMed:10231394, ECO:0000269|PubMed:10428031,
CC       ECO:0000269|PubMed:10963667, ECO:0000269|PubMed:23418588,
CC       ECO:0000269|PubMed:9856465, ECO:0000269|PubMed:9856466,
CC       ECO:0000269|PubMed:9891984}.
CC   -!- DEVELOPMENTAL STAGE: Expression is highest in whole embryos at 11 dpc
CC       and gradually decreases as embryonic development progresses. At 7.5
CC       dpc, expressed in germ cell layers. At 14.5 dpc, expressed at highest
CC       levels in thymus, liver, gastrointestinal tract, lung and the rapidly
CC       proliferating ventricular zone of the brain.
CC       {ECO:0000269|PubMed:10963667, ECO:0000269|PubMed:12875843,
CC       ECO:0000269|PubMed:9856465, ECO:0000269|PubMed:9891984}.
CC   -!- INDUCTION: In retina, expression exhibits a circadian rhythm in the
CC       presence of light/dark cycles. In the suprachiasmatic nucleus (SCN),
CC       isoform 1 exhibited 24 hours oscillation, isoform 4 is constitutively
CC       expressed. Shows a circadian expression pattern in the intestine with
CC       peaks at ZT4 and ZT8. {ECO:0000269|PubMed:10231394,
CC       ECO:0000269|PubMed:10428031, ECO:0000269|PubMed:14564007,
CC       ECO:0000269|PubMed:23418588}.
CC   -!- SIMILARITY: Belongs to the timeless family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAH52884.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};
CC       Sequence=AAH64788.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};
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DR   EMBL; AB015598; BAA36500.1; -; mRNA.
DR   EMBL; AF098161; AAC80010.1; -; mRNA.
DR   EMBL; AF071506; AAC79687.1; -; mRNA.
DR   EMBL; AB019001; BAA76390.2; -; mRNA.
DR   EMBL; AF126480; AAD24467.1; -; mRNA.
DR   EMBL; BC026526; AAH26526.1; -; mRNA.
DR   EMBL; BC052884; AAH52884.1; ALT_SEQ; mRNA.
DR   EMBL; BC058641; AAH58641.1; -; mRNA.
DR   EMBL; BC064788; AAH64788.1; ALT_SEQ; mRNA.
DR   EMBL; BC082770; AAH82770.1; -; mRNA.
DR   CCDS; CCDS24266.1; -. [Q9R1X4-1]
DR   CCDS; CCDS48724.1; -. [Q9R1X4-6]
DR   CCDS; CCDS48725.1; -. [Q9R1X4-2]
DR   PIR; T13956; T13956.
DR   RefSeq; NP_001129554.1; NM_001136082.2. [Q9R1X4-2]
DR   RefSeq; NP_001157552.1; NM_001164080.1. [Q9R1X4-6]
DR   RefSeq; NP_001157553.1; NM_001164081.1. [Q9R1X4-1]
DR   RefSeq; NP_035719.1; NM_011589.2. [Q9R1X4-1]
DR   RefSeq; XP_006513646.1; XM_006513583.3. [Q9R1X4-1]
DR   AlphaFoldDB; Q9R1X4; -.
DR   SMR; Q9R1X4; -.
DR   BioGRID; 204198; 42.
DR   IntAct; Q9R1X4; 26.
DR   STRING; 10090.ENSMUSP00000058021; -.
DR   iPTMnet; Q9R1X4; -.
DR   PhosphoSitePlus; Q9R1X4; -.
DR   EPD; Q9R1X4; -.
DR   MaxQB; Q9R1X4; -.
DR   PaxDb; Q9R1X4; -.
DR   PeptideAtlas; Q9R1X4; -.
DR   PRIDE; Q9R1X4; -.
DR   ProteomicsDB; 262789; -. [Q9R1X4-1]
DR   ProteomicsDB; 262790; -. [Q9R1X4-2]
DR   ProteomicsDB; 262791; -. [Q9R1X4-3]
DR   ProteomicsDB; 262792; -. [Q9R1X4-4]
DR   ProteomicsDB; 262793; -. [Q9R1X4-5]
DR   ProteomicsDB; 262794; -. [Q9R1X4-6]
DR   Antibodypedia; 15850; 213 antibodies from 31 providers.
DR   DNASU; 21853; -.
DR   Ensembl; ENSMUST00000055539; ENSMUSP00000058021; ENSMUSG00000039994. [Q9R1X4-1]
DR   Ensembl; ENSMUST00000105242; ENSMUSP00000100876; ENSMUSG00000039994. [Q9R1X4-2]
DR   Ensembl; ENSMUST00000105244; ENSMUSP00000100878; ENSMUSG00000039994. [Q9R1X4-6]
DR   Ensembl; ENSMUST00000105245; ENSMUSP00000100879; ENSMUSG00000039994. [Q9R1X4-1]
DR   GeneID; 21853; -.
DR   KEGG; mmu:21853; -.
DR   UCSC; uc007hlv.2; mouse. [Q9R1X4-1]
DR   UCSC; uc007hlw.2; mouse. [Q9R1X4-2]
DR   CTD; 8914; -.
DR   MGI; MGI:1321393; Timeless.
DR   VEuPathDB; HostDB:ENSMUSG00000039994; -.
DR   eggNOG; KOG1974; Eukaryota.
DR   GeneTree; ENSGT00390000015124; -.
DR   InParanoid; Q9R1X4; -.
DR   OMA; QGPEECG; -.
DR   OrthoDB; 839367at2759; -.
DR   PhylomeDB; Q9R1X4; -.
DR   TreeFam; TF312802; -.
DR   Reactome; R-MMU-5693607; Processing of DNA double-strand break ends.
DR   BioGRID-ORCS; 21853; 26 hits in 76 CRISPR screens.
DR   ChiTaRS; Timeless; mouse.
DR   PRO; PR:Q9R1X4; -.
DR   Proteomes; UP000000589; Chromosome 10.
DR   RNAct; Q9R1X4; protein.
DR   Bgee; ENSMUSG00000039994; Expressed in lumbar dorsal root ganglion and 195 other tissues.
DR   ExpressionAtlas; Q9R1X4; baseline and differential.
DR   Genevisible; Q9R1X4; MM.
DR   GO; GO:0000785; C:chromatin; ISO:MGI.
DR   GO; GO:0005654; C:nucleoplasm; ISO:MGI.
DR   GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR   GO; GO:0031298; C:replication fork protection complex; IBA:GO_Central.
DR   GO; GO:0035861; C:site of double-strand break; ISS:UniProtKB.
DR   GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR   GO; GO:0042802; F:identical protein binding; IPI:MGI.
DR   GO; GO:0001658; P:branching involved in ureteric bud morphogenesis; ISO:MGI.
DR   GO; GO:0048754; P:branching morphogenesis of an epithelial tube; IMP:MGI.
DR   GO; GO:0044770; P:cell cycle phase transition; ISO:MGI.
DR   GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR   GO; GO:1904976; P:cellular response to bleomycin; ISS:UniProtKB.
DR   GO; GO:0072719; P:cellular response to cisplatin; ISS:UniProtKB.
DR   GO; GO:0006974; P:cellular response to DNA damage stimulus; IMP:UniProtKB.
DR   GO; GO:0072711; P:cellular response to hydroxyurea; ISS:UniProtKB.
DR   GO; GO:0007623; P:circadian rhythm; IEP:UniProtKB.
DR   GO; GO:0006281; P:DNA repair; IBA:GO_Central.
DR   GO; GO:0000076; P:DNA replication checkpoint signaling; IBA:GO_Central.
DR   GO; GO:0001822; P:kidney development; ISO:MGI.
DR   GO; GO:0030324; P:lung development; IMP:MGI.
DR   GO; GO:0002009; P:morphogenesis of an epithelium; IEP:UniProtKB.
DR   GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; TAS:MGI.
DR   GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISS:UniProtKB.
DR   GO; GO:0042753; P:positive regulation of circadian rhythm; ISO:MGI.
DR   GO; GO:2000781; P:positive regulation of double-strand break repair; ISS:UniProtKB.
DR   GO; GO:1905168; P:positive regulation of double-strand break repair via homologous recombination; ISS:UniProtKB.
DR   GO; GO:0042752; P:regulation of circadian rhythm; IMP:UniProtKB.
DR   GO; GO:0043111; P:replication fork arrest; IBA:GO_Central.
DR   GO; GO:0048478; P:replication fork protection; IBA:GO_Central.
DR   InterPro; IPR044998; Timeless.
DR   InterPro; IPR007725; TIMELESS_C.
DR   InterPro; IPR006906; Timeless_N.
DR   PANTHER; PTHR22940; PTHR22940; 1.
DR   Pfam; PF04821; TIMELESS; 1.
DR   Pfam; PF05029; TIMELESS_C; 1.
PE   1: Evidence at protein level;
KW   Alternative splicing; Biological rhythms; Cell cycle; Cell division;
KW   Chromosome; Developmental protein; DNA damage; DNA repair; Mitosis;
KW   Nucleus; Phosphoprotein; Reference proteome; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..1197
FT                   /note="Protein timeless homolog"
FT                   /id="PRO_0000072539"
FT   REGION          1..309
FT                   /note="Required for homodimerization and for interaction
FT                   with CRY1 and CHEK1"
FT                   /evidence="ECO:0000269|PubMed:23418588"
FT   REGION          647..674
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          943..1002
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          997..1095
FT                   /note="Interaction with PARP1"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UNS1"
FT   REGION          1079..1197
FT                   /note="Required for nuclear localization"
FT                   /evidence="ECO:0000269|PubMed:23418588"
FT   REGION          1088..1197
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        657..674
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        964..986
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        988..1002
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1116..1144
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1151..1165
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         281
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UNS1"
FT   MOD_RES         1071
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UNS1"
FT   MOD_RES         1084
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UNS1"
FT   MOD_RES         1086
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UNS1"
FT   MOD_RES         1165
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q9UNS1"
FT   VAR_SEQ         1..721
FT                   /note="Missing (in isoform 4 and isoform 5)"
FT                   /evidence="ECO:0000303|PubMed:10963667,
FT                   ECO:0000303|PubMed:15489334"
FT                   /id="VSP_051694"
FT   VAR_SEQ         952
FT                   /note="Missing (in isoform 2, isoform 3 and isoform 4)"
FT                   /evidence="ECO:0000303|PubMed:10963667,
FT                   ECO:0000303|PubMed:15489334"
FT                   /id="VSP_051695"
FT   VAR_SEQ         967..1104
FT                   /note="Missing (in isoform 3)"
FT                   /evidence="ECO:0000303|PubMed:15489334"
FT                   /id="VSP_051696"
FT   VAR_SEQ         1177
FT                   /note="Missing (in isoform 6)"
FT                   /evidence="ECO:0000303|PubMed:9856465"
FT                   /id="VSP_051697"
FT   CONFLICT        179
FT                   /note="I -> V (in Ref. 6; AAH64788)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        298
FT                   /note="H -> R (in Ref. 6; AAH64788)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        317
FT                   /note="R -> G (in Ref. 6; AAH64788)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        583
FT                   /note="A -> V (in Ref. 4; BAA76390)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        744
FT                   /note="L -> H (in Ref. 5; AAD24467)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        846
FT                   /note="H -> Y (in Ref. 5; AAD24467)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        956
FT                   /note="K -> R (in Ref. 5; AAD24467)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1068
FT                   /note="P -> L (in Ref. 5; AAD24467)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1190
FT                   /note="F -> L (in Ref. 4; BAA76390)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1196
FT                   /note="D -> G (in Ref. 4; BAA76390)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   1197 AA;  137503 MW;  DB24B7F0F3D05787 CRC64;
     MDLYMMNCEL LATCSALGYL EGGTYHKEPD CLESVKDLIR YLRHEDETRD VRQQLGAAQI
     LQSDLLPILT QHRQDKPLFD AVIRLMVNLT QPALLCFGSV PKDSSVRHHF LQVLTYLQAY
     KEAFASEKAF GVLSETLYEL LQLGWEDRQE EDNLLIERIL LLVRNILHVP ANLEQEKSID
     DDASIHDRLL WAIHLSGMDD LLLFLSSSSA EQQWSLHVLE IISLMFRDQT PEQLAGVGQG
     RLAQERSTDV AELEVLRQRE MAEKRARALQ RGNRHSRFGG SYIVQGLKSI GEKDVVFHKG
     LHNLQNYSSD LGKQPRRVPK RRQAAQELSV HRRSVLNVRL FLRDFCSEFL ENCYNPLMGA
     VKDHLLRERA QQHDETYYMW AMAFFMAFNR AATFRPGLVS ETLSIRTFHF VEQNLTNYYE
     MMLTDRKEAA SWARRMHLAL KAYQELLATV NEMDMCPDEA VRESSRIIKN NIFYMMEYRE
     LFLALFRKFD ERYHPRSFLR DLVETTHLFL KMLERFCRSR GNLMVQNKRK KRKKKKKVQD
     QGVAFSQSPG ELEAMWPALA EQLLQCAQDP ELSVDPVVPF DAASEVPVEE QRVEAMVRIQ
     DCLTAGQAPQ ALALLRSARE VWPEGNAFGS PVISPGEEMQ LLKQILSTPL PRQQEPEEGD
     AEEEEEEEEE EELQVVQVSE KEFNFLEYLK RFASSTIVRA YVLLLRSYRQ NSAHTNHCIA
     KMLHRLAHGL GMEALLFQLS LFCLFNRLLS DPAAAAYKEL VTFAKYIIGK FFALAAVNQK
     AFVELLFWKN TAVVREMTQG YGSLDSGSSS HRAPLWSPEE EAQLQELYLA HKDVEGQDVV
     ETILAHLKVV PRTRKQVIHH LVRMGLADSV KEFQKRKGTQ IVLWTEDQEL ELQRLFEEFR
     DSDDVLGQIM KNITAKRSRA RVVDKLLALG LVSERRQLYK KRRKKLAPSC MQNGEKSPRD
     PWQEDPEEED EHLPEDESED EESEEGLPSG QGQGSSSLSA ENLGESLRQE GLSAPLLWLQ
     SSLIRAANDR EEDGCSQAIP LVPLTEENEE AMENEQFQHL LRKLGIRPPS SGQETFWRIP
     AKLSSTQLRR VAASLSQQEN EEEREEEPEP GVPGEQGPSE EHRTEALRAL LSARKRKAGL
     GPTEEEATGE EEWNSAPKKR QLLDSDEEED DEGRRQAVSG TPRVHRKKRF QIEDEDD
 
 
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