TIP11_ORYSJ
ID TIP11_ORYSJ Reviewed; 250 AA.
AC P50156; Q10RT7; Q7G7J2;
DT 01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-1996, sequence version 1.
DT 03-AUG-2022, entry version 148.
DE RecName: Full=Probable aquaporin TIP1-1;
DE AltName: Full=Tonoplast intrinsic protein 1-1;
DE Short=OsTIP1;1;
DE AltName: Full=rTIP1;
GN Name=TIP1-1; Synonyms=YK333;
GN OrderedLocusNames=Os03g0146100, LOC_Os03g05290;
GN ORFNames=OsJ_009057, OSJNBa0067N01.16;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, AND INDUCTION.
RC TISSUE=Anther;
RX PubMed=7858235; DOI=10.1007/bf00019511;
RA Liu Q., Umeda M., Uchimiya H.;
RT "Isolation and expression analysis of two rice genes encoding the major
RT intrinsic protein.";
RL Plant Mol. Biol. 26:2003-2007(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP NOMENCLATURE, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=16033806; DOI=10.1093/pcp/pci172;
RA Sakurai J., Ishikawa F., Yamaguchi T., Uemura M., Maeshima M.;
RT "Identification of 33 rice aquaporin genes and analysis of their expression
RT and function.";
RL Plant Cell Physiol. 46:1568-1577(2005).
CC -!- FUNCTION: Aquaporins facilitate the transport of water and small
CC neutral solutes across cell membranes. May be involved in transport
CC from the vacuolar compartment to the cytoplasm (By similarity).
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Vacuole membrane {ECO:0000250}; Multi-pass
CC membrane protein {ECO:0000250}. Note=Tonoplast.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=P50156-1; Sequence=Displayed;
CC Name=2;
CC IsoId=P50156-2; Sequence=VSP_039469;
CC -!- TISSUE SPECIFICITY: Expressed in roots and leaves.
CC {ECO:0000269|PubMed:16033806, ECO:0000269|PubMed:7858235}.
CC -!- INDUCTION: By osmotic stress and abscisic acid (ABA). Down-regulated by
CC chilling. {ECO:0000269|PubMed:16033806, ECO:0000269|PubMed:7858235}.
CC -!- DOMAIN: Aquaporins contain two tandem repeats each containing three
CC membrane-spanning domains and a pore-forming loop with the signature
CC motif Asn-Pro-Ala (NPA).
CC -!- SIMILARITY: Belongs to the MIP/aquaporin (TC 1.A.8) family. TIP (TC
CC 1.A.8.10) subfamily. {ECO:0000305}.
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DR EMBL; D25534; BAA05017.1; -; mRNA.
DR EMBL; AC090485; AAK98737.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF93961.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10870.2; -; Genomic_DNA.
DR EMBL; AP014959; BAS82275.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82276.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ25574.1; -; Genomic_DNA.
DR EMBL; AK058322; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK060994; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; S52004; S52004.
DR RefSeq; XP_015631095.1; XM_015775609.1. [P50156-1]
DR AlphaFoldDB; P50156; -.
DR SMR; P50156; -.
DR STRING; 4530.OS03T0146100-01; -.
DR PaxDb; P50156; -.
DR PRIDE; P50156; -.
DR EnsemblPlants; Os03t0146100-01; Os03t0146100-01; Os03g0146100. [P50156-1]
DR EnsemblPlants; Os03t0146100-03; Os03t0146100-03; Os03g0146100. [P50156-2]
DR GeneID; 4331608; -.
DR Gramene; Os03t0146100-01; Os03t0146100-01; Os03g0146100. [P50156-1]
DR Gramene; Os03t0146100-03; Os03t0146100-03; Os03g0146100. [P50156-2]
DR KEGG; osa:4331608; -.
DR eggNOG; KOG0223; Eukaryota.
DR HOGENOM; CLU_020019_3_4_1; -.
DR InParanoid; P50156; -.
DR OMA; IRAFFYI; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; P50156; baseline and differential.
DR Genevisible; P50156; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0009705; C:plant-type vacuole membrane; IBA:GO_Central.
DR GO; GO:0015250; F:water channel activity; IBA:GO_Central.
DR GO; GO:0006833; P:water transport; IBA:GO_Central.
DR CDD; cd00333; MIP; 1.
DR Gene3D; 1.20.1080.10; -; 1.
DR InterPro; IPR023271; Aquaporin-like.
DR InterPro; IPR034294; Aquaporin_transptr.
DR InterPro; IPR000425; MIP.
DR InterPro; IPR022357; MIP_CS.
DR PANTHER; PTHR45665; PTHR45665; 1.
DR Pfam; PF00230; MIP; 1.
DR PRINTS; PR00783; MINTRINSICP.
DR SUPFAM; SSF81338; SSF81338; 1.
DR PROSITE; PS00221; MIP; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Membrane; Reference proteome; Repeat;
KW Stress response; Transmembrane; Transmembrane helix; Transport; Vacuole.
FT CHAIN 1..250
FT /note="Probable aquaporin TIP1-1"
FT /id="PRO_0000064021"
FT TRANSMEM 25..44
FT /note="Helical; Name=1"
FT /evidence="ECO:0000255"
FT TRANSMEM 58..77
FT /note="Helical; Name=2"
FT /evidence="ECO:0000255"
FT TRANSMEM 103..121
FT /note="Helical; Name=3"
FT /evidence="ECO:0000255"
FT TRANSMEM 144..163
FT /note="Helical; Name=4"
FT /evidence="ECO:0000255"
FT TRANSMEM 170..192
FT /note="Helical; Name=5"
FT /evidence="ECO:0000255"
FT TRANSMEM 216..233
FT /note="Helical; Name=6"
FT /evidence="ECO:0000255"
FT MOTIF 85..87
FT /note="NPA 1"
FT MOTIF 198..200
FT /note="NPA 2"
FT VAR_SEQ 170..223
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_039469"
SQ SEQUENCE 250 AA; 25700 MW; F3361746B2506B0D CRC64;
MPIRNIAVGS HQEVYHPGAL KAALAEFIST LIFVFAGQGS GMAFSKLTGG GATTPAGLIA
AAVAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGNITL FRGLLYWIAQ LLGSTVACFL
LRFSTGGLAT GTFGLTGVSV WEALVLEIVM TFGLVYTVYA TAVDPKKGSL GTIAPIAIGF
IVGANILVGG AFDGASMNPA VSFGPALVSW SWESQWVYWV GPLIGGGLAG VIYEVLFISH
THEQLPTTDY
