TIPD_DICDI
ID TIPD_DICDI Reviewed; 612 AA.
AC O15736; Q553S4;
DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Protein tipD;
GN Name=tipD; ORFNames=DDB_G0275323;
OS Dictyostelium discoideum (Slime mold).
OC Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales;
OC Dictyosteliaceae; Dictyostelium.
OX NCBI_TaxID=44689;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=AX4;
RA Stege J.T., Loomis W.F.;
RL Submitted (AUG-1997) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=12097910; DOI=10.1038/nature00847;
RA Gloeckner G., Eichinger L., Szafranski K., Pachebat J.A., Bankier A.T.,
RA Dear P.H., Lehmann R., Baumgart C., Parra G., Abril J.F., Guigo R.,
RA Kumpf K., Tunggal B., Cox E.C., Quail M.A., Platzer M., Rosenthal A.,
RA Noegel A.A.;
RT "Sequence and analysis of chromosome 2 of Dictyostelium discoideum.";
RL Nature 418:79-85(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=15875012; DOI=10.1038/nature03481;
RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R.,
RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B.,
RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T.,
RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G.,
RA Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N.,
RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E.,
RA Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N.,
RA Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D.,
RA Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T.,
RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D.,
RA Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A.,
RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M.,
RA Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A.,
RA Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y.,
RA Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C.,
RA Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R.,
RA Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
RT "The genome of the social amoeba Dictyostelium discoideum.";
RL Nature 435:43-57(2005).
CC -!- FUNCTION: Not known; disruption of the gene for tipD results in
CC morphological defects.
CC -!- SIMILARITY: Belongs to the WD repeat tipD family. {ECO:0000305}.
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DR EMBL; AF019236; AAB70659.1; -; Genomic_DNA.
DR EMBL; AAFI02000013; EAL69727.1; -; Genomic_DNA.
DR PIR; T08602; T08602.
DR RefSeq; XP_643673.1; XM_638581.1.
DR AlphaFoldDB; O15736; -.
DR SMR; O15736; -.
DR BioGRID; 1244942; 2.
DR STRING; 44689.DDB0215341; -.
DR PaxDb; O15736; -.
DR EnsemblProtists; EAL69727; EAL69727; DDB_G0275323.
DR GeneID; 8619939; -.
DR KEGG; ddi:DDB_G0275323; -.
DR dictyBase; DDB_G0275323; tipD.
DR eggNOG; KOG0288; Eukaryota.
DR HOGENOM; CLU_000288_57_10_1; -.
DR InParanoid; O15736; -.
DR OMA; LFVWEVN; -.
DR PhylomeDB; O15736; -.
DR Reactome; R-DDI-1632852; Macroautophagy.
DR PRO; PR:O15736; -.
DR Proteomes; UP000002195; Chromosome 2.
DR GO; GO:0034274; C:Atg12-Atg5-Atg16 complex; ISS:dictyBase.
DR GO; GO:0000421; C:autophagosome membrane; IBA:GO_Central.
DR GO; GO:0031012; C:extracellular matrix; HDA:dictyBase.
DR GO; GO:0019776; F:Atg8 ligase activity; ISS:dictyBase.
DR GO; GO:0000045; P:autophagosome assembly; IMP:dictyBase.
DR GO; GO:0097352; P:autophagosome maturation; IMP:dictyBase.
DR GO; GO:0031154; P:culmination involved in sorocarp development; IMP:dictyBase.
DR GO; GO:0016236; P:macroautophagy; IMP:dictyBase.
DR GO; GO:0006909; P:phagocytosis; IMP:dictyBase.
DR GO; GO:0006907; P:pinocytosis; IMP:dictyBase.
DR GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IMP:dictyBase.
DR GO; GO:0030587; P:sorocarp development; HMP:dictyBase.
DR Gene3D; 2.130.10.10; -; 3.
DR InterPro; IPR024977; Apc4_WD40_dom.
DR InterPro; IPR045160; ATG16.
DR InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR PANTHER; PTHR19878; PTHR19878; 1.
DR Pfam; PF12894; ANAPC4_WD40; 1.
DR Pfam; PF08614; ATG16; 1.
DR Pfam; PF00400; WD40; 4.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; SSF50978; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 5.
DR PROSITE; PS50082; WD_REPEATS_2; 6.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 3: Inferred from homology;
KW Reference proteome; Repeat; WD repeat.
FT CHAIN 1..612
FT /note="Protein tipD"
FT /id="PRO_0000051275"
FT REPEAT 322..361
FT /note="WD 1"
FT REPEAT 364..403
FT /note="WD 2"
FT REPEAT 406..444
FT /note="WD 3"
FT REPEAT 447..486
FT /note="WD 4"
FT REPEAT 490..530
FT /note="WD 5"
FT REPEAT 535..576
FT /note="WD 6"
FT REPEAT 582..611
FT /note="WD 7"
FT REGION 95..128
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 97..128
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 612 AA; 68747 MW; 4DB6D03EDEC0B6E1 CRC64;
MFSSQNNSYM MMMGGGGIGN INNNQFYSPI ISTSAQSFNS IVEWKRDIIR QLNDRNQNQT
NNYSEFMRIY TDLLKRERTL NDRTLLYEKE IVSLRNEKKT QQQPPSGSSK MDSSSSSSSS
NRVSGMGSTI EEMEQKLFKL QEDLTNSYKR NADNASSILL LNDKNKDLQN ELMSKEIEIE
RIRSTIQQDL DSIKRLEMVV IEKENVSQII RDELSSLQTE FLHNESKVVK LEQENSSLVE
RWLRKKNEEA SKMNEANDFY QKMVEQRDST PAKAAVQLSE SISNLVVKLP DANDVPIPIV
LERGVFSSEA MLPSKAKKRW TGHNSEIYCM AFNSIGNLLA TGGGDKCVKV WDVISGQQKS
TLLGASQSIV SVSFSPNDES ILGTSNDNSA RLWNTELGRS RHTLTGHIGK VYTGKFINSN
RVVTGSHDRT IKLWDLQKGY CTRTIFCFSS CNDLVILGGS GTHLASGHVD HSVRFWDSNA
GEPTQVLSSI HEGQITSITN SPTNTNQILT NSRDHTLKII DIRTFDTIRT FKDPEYRNGL
NWTKASWSPD GRYIASGSID GSICIWDATN GKTVKVLTKV HNNGSSVCCC SWSPLANIFI
SADKDKNIIQ WE