TLP10_ORYSJ
ID TLP10_ORYSJ Reviewed; 352 AA.
AC Q688Y7; A0A0N7KL85; A3B6R9;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Tubby-like F-box protein 10;
DE Short=OsTLP10;
DE AltName: Full=Tubby-like F-box protein 11;
DE Short=OsTLP11;
GN Name=TULP10; Synonyms=TULP11;
GN OrderedLocusNames=Os05g0560400, LOC_Os05g48670; ORFNames=OJ1115_B06.6;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18070109; DOI=10.1111/j.1742-4658.2007.06186.x;
RA Liu Q.;
RT "Identification of rice TUBBY-like genes and their evolution.";
RL FEBS J. 275:163-171(2008).
RN [7]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18620041; DOI=10.1016/j.ygeno.2008.06.001;
RA Yang Z., Zhou Y., Wang X., Gu S., Yu J., Liang G., Yan C., Xu C.;
RT "Genomewide comparative phylogenetic and molecular evolutionary analysis of
RT tubby-like protein family in Arabidopsis, rice, and poplar.";
RL Genomics 92:246-253(2008).
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18620041}.
CC -!- SIMILARITY: Belongs to the TUB family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF18222.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC113333; AAU10642.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF18222.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014961; BAS95313.1; -; Genomic_DNA.
DR EMBL; CM000142; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015639807.1; XM_015784321.1.
DR AlphaFoldDB; Q688Y7; -.
DR SMR; Q688Y7; -.
DR STRING; 4530.OS05T0560400-00; -.
DR PRIDE; Q688Y7; -.
DR EnsemblPlants; Os05t0560400-00; Os05t0560400-00; Os05g0560400.
DR GeneID; 4339597; -.
DR Gramene; Os05t0560400-00; Os05t0560400-00; Os05g0560400.
DR KEGG; osa:4339597; -.
DR eggNOG; KOG2502; Eukaryota.
DR HOGENOM; CLU_028236_3_0_1; -.
DR InParanoid; Q688Y7; -.
DR OMA; EGSEDQW; -.
DR OrthoDB; 1445357at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q688Y7; OS.
DR Gene3D; 3.20.90.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR025659; Tubby-like_C.
DR InterPro; IPR000007; Tubby_C.
DR InterPro; IPR018066; Tubby_C_CS.
DR Pfam; PF01167; Tub; 1.
DR PRINTS; PR01573; SUPERTUBBY.
DR SUPFAM; SSF54518; SSF54518; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS01200; TUB_1; 1.
DR PROSITE; PS01201; TUB_2; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..352
FT /note="Tubby-like F-box protein 10"
FT /id="PRO_0000351129"
FT DOMAIN 22..78
FT /note="F-box"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 352 AA; 39679 MW; 00664E234BCDA879 CRC64;
MAAVREPREE AAVGEGEGEE EGRWGGLLPE LVEEVVRRVE ASGGERWPAR KDLVSCACVC
RRWREAAAAV VRPLPESGRI TFPSSLKQPG PKDFPIQCFV KRNKKKSMFY LYLGLLNGTM
DKGKFLMAAR RFRRGPHTEY VISLDADDLS QGSNAYVGKL RSDFWGTNFK IYDNQPPYDD
AKTSSTRSSQ RFGSTHRFGS RRICPQISAG NFNVGQISYK YNLLKSRGPR RMFCTMECPS
TQETWENSLK TKSLRCTGTT VLRNKAPRWH EHLQCWCLNF HGRVTVASVK NFQLVATADP
SHPDSVGDEE TVILQFGKVD SNIFTMDYRQ PLSAFQAFAI CLSSFGTKLA CE
