ID   TLP13_ORYSJ             Reviewed;         440 AA.
AC   Q53PP5; B7EHE4; Q0IUD8; Q53PP4;
DT   23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT   24-MAY-2005, sequence version 1.
DT   25-MAY-2022, entry version 99.
DE   RecName: Full=Tubby-like F-box protein 13;
DE            Short=OsTLP13;
DE   AltName: Full=Tubby-like F-box protein 6;
DE            Short=OsTLP6;
GN   Name=TULP13; Synonyms=TULP6;
GN   OrderedLocusNames=Os11g0163600, LOC_Os11g06420; ORFNames=OsJ_33072;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=18070109; DOI=10.1111/j.1742-4658.2007.06186.x;
RA   Liu Q.;
RT   "Identification of rice TUBBY-like genes and their evolution.";
RL   FEBS J. 275:163-171(2008).
RN   [8]
RP   TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=18620041; DOI=10.1016/j.ygeno.2008.06.001;
RA   Yang Z., Zhou Y., Wang X., Gu S., Yu J., Liang G., Yan C., Xu C.;
RT   "Genomewide comparative phylogenetic and molecular evolutionary analysis of
RT   tubby-like protein family in Arabidopsis, rice, and poplar.";
RL   Genomics 92:246-253(2008).
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q53PP5-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q53PP5-2; Sequence=VSP_035470;
CC   -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18620041}.
CC   -!- SIMILARITY: Belongs to the TUB family. {ECO:0000305}.
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DR   EMBL; AC120533; AAX95105.1; -; Genomic_DNA.
DR   EMBL; AC120533; AAX95106.1; -; Genomic_DNA.
DR   EMBL; DP000010; ABA91673.1; -; Genomic_DNA.
DR   EMBL; DP000010; ABA91674.1; -; Genomic_DNA.
DR   EMBL; AP008217; BAF27677.2; -; Genomic_DNA.
DR   EMBL; AP014967; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CM000148; EAZ17539.1; -; Genomic_DNA.
DR   EMBL; AK070139; BAG91791.1; -; mRNA.
DR   RefSeq; XP_015618033.1; XM_015762547.1. [Q53PP5-1]
DR   RefSeq; XP_015618035.1; XM_015762549.1. [Q53PP5-2]
DR   AlphaFoldDB; Q53PP5; -.
DR   SMR; Q53PP5; -.
DR   STRING; 4530.OS11T0163600-01; -.
DR   PaxDb; Q53PP5; -.
DR   PRIDE; Q53PP5; -.
DR   GeneID; 4349867; -.
DR   KEGG; osa:4349867; -.
DR   InParanoid; Q53PP5; -.
DR   OrthoDB; 1445357at2759; -.
DR   Proteomes; UP000000763; Chromosome 11.
DR   Proteomes; UP000007752; Chromosome 11.
DR   Proteomes; UP000059680; Chromosome 11.
DR   Gene3D; 3.20.90.10; -; 2.
DR   InterPro; IPR036047; F-box-like_dom_sf.
DR   InterPro; IPR001810; F-box_dom.
DR   InterPro; IPR025659; Tubby-like_C.
DR   InterPro; IPR000007; Tubby_C.
DR   InterPro; IPR018066; Tubby_C_CS.
DR   Pfam; PF00646; F-box; 1.
DR   Pfam; PF01167; Tub; 1.
DR   PRINTS; PR01573; SUPERTUBBY.
DR   SUPFAM; SSF54518; SSF54518; 1.
DR   SUPFAM; SSF81383; SSF81383; 1.
DR   PROSITE; PS01200; TUB_1; 1.
DR   PROSITE; PS01201; TUB_2; 1.
PE   2: Evidence at transcript level;
KW   Alternative splicing; Reference proteome.
FT   CHAIN           1..440
FT                   /note="Tubby-like F-box protein 13"
FT                   /id="PRO_0000351132"
FT   DOMAIN          51..106
FT                   /note="F-box"
FT   VAR_SEQ         1..123
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:12869764"
FT                   /id="VSP_035470"
SQ   SEQUENCE   440 AA;  48956 MW;  9D9D7312F67AB9B4 CRC64;
     MSFRSIVRDV RDGFGSLSRR GFEVRILGHR RGKSHGAVHE LHDPVPVIQS SCWASLPPEL
     LRDIIERLEE SEATWPSRKH VVACAGVCRT WREMCKEIVK NPELCGKITF PISLRQPGPR
     DGTMQCFIRR DKSTQTYYLY LSLGSAVLVD NGKFLLSAKR NWHATCTEYV ISMNANNLSR
     STNTNIGKLR SNFLGTKFVI YDTHTPYNAT SDSQSGKTSR RFSNKGTAKH PCSTYSIANI
     SYELNVFGTR GPRRMCCLMH SIPASSLEAG GTVPSQPDSI LAHSLNESSF RSVSFSKSSV
     MDHSMHFSSA QFSDISIGDG PRIGGRVLSD DEECKETPLI LQNKAPRWHE QLQCWCLNFR
     GRVTVASVKN FQLIAATQPA AGAPTPSQPV PPPPPEHDKV ILQFGKVAKD MFTMDYHYPL
     SAFQAFAISL SSFDTKLACE