TLP1_ORYSJ
ID TLP1_ORYSJ Reviewed; 356 AA.
AC Q5QM27;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 04-JAN-2005, sequence version 1.
DT 25-MAY-2022, entry version 80.
DE RecName: Full=Tubby-like F-box protein 1;
DE Short=OsTLP1;
DE AltName: Full=Tubby-like F-box protein 9;
DE Short=OsTLP9;
GN Name=TULP1; Synonyms=TULP9; OrderedLocusNames=Os01g0674500, LOC_Os01g48370;
GN ORFNames=OJ1117_G01.2-1, P0485G01.36-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18070109; DOI=10.1111/j.1742-4658.2007.06186.x;
RA Liu Q.;
RT "Identification of rice TUBBY-like genes and their evolution.";
RL FEBS J. 275:163-171(2008).
RN [6]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18620041; DOI=10.1016/j.ygeno.2008.06.001;
RA Yang Z., Zhou Y., Wang X., Gu S., Yu J., Liang G., Yan C., Xu C.;
RT "Genomewide comparative phylogenetic and molecular evolutionary analysis of
RT tubby-like protein family in Arabidopsis, rice, and poplar.";
RL Genomics 92:246-253(2008).
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18620041}.
CC -!- SIMILARITY: Belongs to the TUB family. {ECO:0000305}.
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DR EMBL; AP003264; BAD73373.1; -; Genomic_DNA.
DR EMBL; AP003374; BAD73520.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS73645.1; -; Genomic_DNA.
DR EMBL; AK070401; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015621789.1; XM_015766303.1.
DR AlphaFoldDB; Q5QM27; -.
DR SMR; Q5QM27; -.
DR STRING; 4530.OS01T0674500-01; -.
DR PaxDb; Q5QM27; -.
DR PRIDE; Q5QM27; -.
DR EnsemblPlants; Os01t0674500-01; Os01t0674500-01; Os01g0674500.
DR EnsemblPlants; Os01t0674500-02; Os01t0674500-02; Os01g0674500.
DR GeneID; 4325911; -.
DR Gramene; Os01t0674500-01; Os01t0674500-01; Os01g0674500.
DR Gramene; Os01t0674500-02; Os01t0674500-02; Os01g0674500.
DR KEGG; osa:4325911; -.
DR eggNOG; KOG2502; Eukaryota.
DR HOGENOM; CLU_028236_3_0_1; -.
DR InParanoid; Q5QM27; -.
DR OMA; QNVVSCA; -.
DR OrthoDB; 1445357at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q5QM27; baseline and differential.
DR Genevisible; Q5QM27; OS.
DR Gene3D; 3.20.90.10; -; 1.
DR InterPro; IPR025659; Tubby-like_C.
DR InterPro; IPR000007; Tubby_C.
DR InterPro; IPR018066; Tubby_C_CS.
DR Pfam; PF01167; Tub; 1.
DR PRINTS; PR01573; SUPERTUBBY.
DR SUPFAM; SSF54518; SSF54518; 1.
DR PROSITE; PS01200; TUB_1; 1.
DR PROSITE; PS01201; TUB_2; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..356
FT /note="Tubby-like F-box protein 1"
FT /id="PRO_0000351120"
FT DOMAIN 32..88
FT /note="F-box"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 16..31
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 356 AA; 40179 MW; E841ED04D2D6B767 CRC64;
MPRETPPPPP PEGGEVHEVV EGEDGQAEDQ EERWARLLPE LMSEVVRRVE ASGGERWPAR
KDVVSCACVC RRWRDAAVAV VRPPAESGKI TFPSSLKQPG PREFPMQCFI KRNKKNSTFY
LYLGLTNATV DKGKFLMAAR RFRRGPHTEY IVSLDADDLS QGSNAYMGKL RSDFWGTNFK
IYDSKPPYDG AKASSSRSSR RFGSRRISPQ VSAGNYEVGQ VSYKYNLLKS RGPRRMYCAL
ECPSTQETWE NCLKTKFRKP TGNTVLRNKA PRWHEHLQCW CLNFHGRVTV ASVKNFQLVA
AADPNDPASS KDEETVLLQF GKVDDNIFTM DYRQPLSAFQ AFAISLSSFG TKLACE
