TLP3_ORYSJ
ID TLP3_ORYSJ Reviewed; 448 AA.
AC Q8LJA9; A0A0P0VAT0;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Tubby-like F-box protein 3;
DE Short=OsTLP3;
DE AltName: Full=Tubby-like F-box protein 5;
DE Short=OsTLP5;
GN Name=TULP3; Synonyms=TULP5; OrderedLocusNames=Os01g0866800, LOC_Os01g64700;
GN ORFNames=OsJ_004102, P0505D12.45;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18070109; DOI=10.1111/j.1742-4658.2007.06186.x;
RA Liu Q.;
RT "Identification of rice TUBBY-like genes and their evolution.";
RL FEBS J. 275:163-171(2008).
RN [8]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18620041; DOI=10.1016/j.ygeno.2008.06.001;
RA Yang Z., Zhou Y., Wang X., Gu S., Yu J., Liang G., Yan C., Xu C.;
RT "Genomewide comparative phylogenetic and molecular evolutionary analysis of
RT tubby-like protein family in Arabidopsis, rice, and poplar.";
RL Genomics 92:246-253(2008).
CC -!- TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and seeds.
CC {ECO:0000269|PubMed:18620041}.
CC -!- SIMILARITY: Belongs to the TUB family. {ECO:0000305}.
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DR EMBL; AP003270; BAC01219.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06824.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75392.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ14277.1; -; Genomic_DNA.
DR EMBL; AK102221; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015641437.1; XM_015785951.1.
DR AlphaFoldDB; Q8LJA9; -.
DR STRING; 4530.OS01T0866800-01; -.
DR PaxDb; Q8LJA9; -.
DR PRIDE; Q8LJA9; -.
DR EnsemblPlants; Os01t0866800-01; Os01t0866800-01; Os01g0866800.
DR GeneID; 4325075; -.
DR Gramene; Os01t0866800-01; Os01t0866800-01; Os01g0866800.
DR KEGG; osa:4325075; -.
DR eggNOG; KOG2502; Eukaryota.
DR HOGENOM; CLU_028236_3_0_1; -.
DR InParanoid; Q8LJA9; -.
DR OMA; DINGSIM; -.
DR OrthoDB; 1445357at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q8LJA9; OS.
DR Gene3D; 3.20.90.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR025659; Tubby-like_C.
DR InterPro; IPR000007; Tubby_C.
DR InterPro; IPR018066; Tubby_C_CS.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF01167; Tub; 1.
DR PRINTS; PR01573; SUPERTUBBY.
DR SUPFAM; SSF54518; SSF54518; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS01200; TUB_1; 1.
DR PROSITE; PS01201; TUB_2; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..448
FT /note="Tubby-like F-box protein 3"
FT /id="PRO_0000351122"
FT DOMAIN 56..102
FT /note="F-box"
FT REGION 387..406
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 388..402
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 356
FT /note="P -> T (in Ref. 6; AK102221)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 448 AA; 49924 MW; 2172769A9CB85892 CRC64;
MSFRSIVRDV RDGFGSLSRR SFEVTLASLY GLTGHHKGKT QSSLDELDDS PAIIPESRWA
SLPPELLREV IRRLEADEST WPSRRNVVCF AAVCRTWREM CKETVLSPEF CGKLTFPVSI
KQPGPRDGMI QCYIKRNRSK STYHLYLCLS NVVTAEGGKF VLAAKRHRKT TCTEYTISMV
SGNISRSSRT NIGKLRSNFL GTKFIIYDTQ PPYNGAVVPH VGRTSKRFNS TKVSPKVPSV
TYNIAQVSYE LNVLGTRGPR RMRCMMHSIP ASSVEPGGIV PGQPEQIVPR ALEDSFRSTT
SFSQSFRSTT SFSKSIMDPS MDFSSARFSD ISGSIMGGDD NGEIKERPLV LRNKPPRWHE
QLQCWCLNFR GRVTIASVKN FQLVAAPSPP PAGAPTPSQP GPADPEKVIL QFGKVARDMF
TMDYRYPLSA FQAFAICLSS FDTKLACE
