TLP7_ORYSJ
ID TLP7_ORYSJ Reviewed; 462 AA.
AC Q7XSV4; B7EW58;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Tubby-like F-box protein 7;
DE Short=OsTLP7;
DE AltName: Full=Tubby-like F-box protein 3;
DE Short=OsTLP3;
GN Name=TULP7; Synonyms=TULP3; OrderedLocusNames=Os04g0687900, LOC_Os04g59130;
GN ORFNames=OSJNBa0039K24.2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18070109; DOI=10.1111/j.1742-4658.2007.06186.x;
RA Liu Q.;
RT "Identification of rice TUBBY-like genes and their evolution.";
RL FEBS J. 275:163-171(2008).
RN [7]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18620041; DOI=10.1016/j.ygeno.2008.06.001;
RA Yang Z., Zhou Y., Wang X., Gu S., Yu J., Liang G., Yan C., Xu C.;
RT "Genomewide comparative phylogenetic and molecular evolutionary analysis of
RT tubby-like protein family in Arabidopsis, rice, and poplar.";
RL Genomics 92:246-253(2008).
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:18620041}.
CC -!- SIMILARITY: Belongs to the TUB family. {ECO:0000305}.
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DR EMBL; AL606637; CAE01783.1; -; Genomic_DNA.
DR EMBL; AP008210; BAF16249.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS91751.1; -; Genomic_DNA.
DR EMBL; AK098928; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK104333; BAG96605.1; -; mRNA.
DR RefSeq; XP_015636871.1; XM_015781385.1.
DR AlphaFoldDB; Q7XSV4; -.
DR SMR; Q7XSV4; -.
DR STRING; 4530.OS04T0687900-01; -.
DR PaxDb; Q7XSV4; -.
DR PRIDE; Q7XSV4; -.
DR EnsemblPlants; Os04t0687900-01; Os04t0687900-01; Os04g0687900.
DR EnsemblPlants; Os04t0687900-03; Os04t0687900-03; Os04g0687900.
DR GeneID; 4337480; -.
DR Gramene; Os04t0687900-01; Os04t0687900-01; Os04g0687900.
DR Gramene; Os04t0687900-03; Os04t0687900-03; Os04g0687900.
DR KEGG; osa:4337480; -.
DR eggNOG; KOG2502; Eukaryota.
DR HOGENOM; CLU_028236_3_0_1; -.
DR InParanoid; Q7XSV4; -.
DR OMA; EVRIHHR; -.
DR OrthoDB; 1445357at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR ExpressionAtlas; Q7XSV4; baseline and differential.
DR Genevisible; Q7XSV4; OS.
DR Gene3D; 3.20.90.10; -; 1.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001810; F-box_dom.
DR InterPro; IPR025659; Tubby-like_C.
DR InterPro; IPR000007; Tubby_C.
DR InterPro; IPR018066; Tubby_C_CS.
DR Pfam; PF00646; F-box; 1.
DR Pfam; PF01167; Tub; 1.
DR PRINTS; PR01573; SUPERTUBBY.
DR SUPFAM; SSF54518; SSF54518; 1.
DR SUPFAM; SSF81383; SSF81383; 1.
DR PROSITE; PS01200; TUB_1; 1.
DR PROSITE; PS01201; TUB_2; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..462
FT /note="Tubby-like F-box protein 7"
FT /id="PRO_0000351126"
FT DOMAIN 54..109
FT /note="F-box"
FT REGION 317..338
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 383..418
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 84
FT /note="V -> D (in Ref. 5; AK098928)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 462 AA; 51529 MW; 5B7C863114B8952E CRC64;
MSFRSIVRDF RDSFGTLSKR SFEVKISGFS GRHRGKSIGP SSELDDTPVV AQQSKWAGLP
PELLRDVMKR LEEDDSNWPS RKDVVACASV CTTWRDMCKD IVRNPEFCGK LTFPVSLKQP
GPRDGVIQCF IKRDKSKLTY HLYLCLSSAV LDETGKFLLS AKRSRRTTHT DYIISMDSKN
ISRSSSGYIG KLRSNFLGTK FIIYDTQPPY NARTLCSQER TSRRFSSRKV SPKVPTGCYP
IVQVNYELNV LGTRGPRRMQ CAMHSIPASA VEPGGIVPGQ PKELLPRLFE ESFRSMATSF
SKYSITDHST DFSSSRFSEF GGGALQGQEQ EQDGDDVNKE RPLVLRNKAP RWHEQLQCWC
LNFRGRVTVA SVKNFQLIAA APQPSSGAAS EPSQAGQAAQ QQTQPSQPSS SSSSSSSNHD
TVILQFGKVA KDMFTMDYRY PLSAFQAFAI CLTSFDTKLA CE
