TNFC_MACMU
ID TNFC_MACMU Reviewed; 244 AA.
AC Q5TM22;
DT 16-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 21-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=Lymphotoxin-beta;
DE Short=LT-beta;
DE AltName: Full=Tumor necrosis factor C;
DE Short=TNF-C;
DE AltName: Full=Tumor necrosis factor ligand superfamily member 3;
GN Name=LTB; Synonyms=TNFC, TNFSF3;
OS Macaca mulatta (Rhesus macaque).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini;
OC Cercopithecidae; Cercopithecinae; Macaca.
OX NCBI_TaxID=9544;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=15269276; DOI=10.1093/molbev/msh216;
RA Kulski J.K., Anzai T., Shiina T., Inoko H.;
RT "Rhesus macaque class I duplicon structures, organization, and evolution
RT within the alpha block of the major histocompatibility complex.";
RL Mol. Biol. Evol. 21:2079-2091(2004).
CC -!- FUNCTION: Cytokine that binds to LTBR/TNFRSF3. May play a specific role
CC in immune response regulation. Provides the membrane anchor for the
CC attachment of the heterotrimeric complex to the cell surface (By
CC similarity). {ECO:0000250}.
CC -!- SUBUNIT: Heterotrimer of either two LTB and one LTA subunits or (less
CC prevalent) two LTA and one LTB subunits. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass type II
CC membrane protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the tumor necrosis factor family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AB128049; BAD69723.1; -; Genomic_DNA.
DR RefSeq; NP_001040615.1; NM_001047150.1.
DR AlphaFoldDB; Q5TM22; -.
DR SMR; Q5TM22; -.
DR STRING; 9544.ENSMMUP00000011600; -.
DR GeneID; 715518; -.
DR KEGG; mcc:715518; -.
DR CTD; 4050; -.
DR eggNOG; ENOG502SMSQ; Eukaryota.
DR HOGENOM; CLU_096531_0_0_1; -.
DR InParanoid; Q5TM22; -.
DR OMA; IGAWTTG; -.
DR OrthoDB; 1338767at2759; -.
DR TreeFam; TF337780; -.
DR Proteomes; UP000006718; Unplaced.
DR GO; GO:0005615; C:extracellular space; IEA:UniProtKB-KW.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005125; F:cytokine activity; IEA:UniProtKB-KW.
DR GO; GO:0005164; F:tumor necrosis factor receptor binding; IEA:InterPro.
DR GO; GO:0006955; P:immune response; IEA:InterPro.
DR CDD; cd00184; TNF; 1.
DR Gene3D; 2.60.120.40; -; 1.
DR InterPro; IPR006053; TNF.
DR InterPro; IPR002961; TNF_C.
DR InterPro; IPR021184; TNF_CS.
DR InterPro; IPR006052; TNF_dom.
DR InterPro; IPR008983; Tumour_necrosis_fac-like_dom.
DR PANTHER; PTHR11471:SF29; PTHR11471:SF29; 1.
DR Pfam; PF00229; TNF; 1.
DR PRINTS; PR01234; TNECROSISFCT.
DR PRINTS; PR01237; TNFC.
DR SMART; SM00207; TNF; 1.
DR SUPFAM; SSF49842; SSF49842; 1.
DR PROSITE; PS00251; TNF_1; 1.
DR PROSITE; PS50049; TNF_2; 1.
PE 3: Inferred from homology;
KW Cytokine; Glycoprotein; Membrane; Reference proteome; Signal-anchor;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..244
FT /note="Lymphotoxin-beta"
FT /id="PRO_0000185488"
FT TOPO_DOM 1..18
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 19..48
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 49..244
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT CARBOHYD 222
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 244 AA; 25259 MW; 46AA5DEEE255B6C2 CRC64;
MGALGLEGRG GRLQGRGSLL LAVAGATSLV TLLLAVPITV LAVLALVPQD QGGLVTDTAD
PGAQAQQGLG FQKLPEEEPE ADLSPGLPAA HLIGAPLKGQ GLGWEATKEQ AFLTSGTQFS
DADGLALPQD GLYYLYCLVG YRGRAPPGGA EPRGRSVTLR SSLYRAGGAY GPGTPELLLE
GAETVTPVLD PAGRQGYGPL WYTSVGFGGL VQLRRGERVY VNISHPDMVD FARGKTFFGA
VMVG