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TONSL_BOVIN
ID   TONSL_BOVIN             Reviewed;        1374 AA.
AC   Q0P5G1;
DT   08-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT   19-SEP-2006, sequence version 1.
DT   03-AUG-2022, entry version 100.
DE   RecName: Full=Tonsoku-like protein {ECO:0000305};
DE   AltName: Full=Inhibitor of kappa B-related protein;
DE            Short=I-kappa-B-related protein;
DE            Short=IkappaBR;
DE   AltName: Full=NF-kappa-B inhibitor-like protein 2;
DE   AltName: Full=Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2;
GN   Name=TONSL; Synonyms=IKBR, NFKBIL2;
OS   Bos taurus (Bovine).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
OX   NCBI_TaxID=9913;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=Hereford; TISSUE=Fetal cerebellum;
RG   NIH - Mammalian Gene Collection (MGC) project;
RL   Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Component of the MMS22L-TONSL complex, a complex that
CC       promotes homologous recombination-mediated repair of double-strand
CC       breaks (DSBs) at stalled or collapsed replication forks. The MMS22L-
CC       TONSL complex is required to maintain genome integrity during DNA
CC       replication. It mediates the assembly of RAD51 filaments on single-
CC       stranded DNA (ssDNA): the MMS22L-TONSL complex is recruited to DSBs
CC       following histone replacement by histone chaperones and eviction of the
CC       replication protein A complex (RPA/RP-A) from DSBs. Following
CC       recruitment to DSBs, the TONSL-MMS22L complex promotes recruitment of
CC       RAD51 filaments and subsequent homologous recombination. Within the
CC       complex, TONSL acts as histone reader, which recognizes and binds newly
CC       synthesized histones following their replacement by histone chaperones.
CC       Specifically binds histone H4 lacking methylation at 'Lys-20'
CC       (H4K20me0) and histone H3.1. {ECO:0000250|UniProtKB:Q96HA7}.
CC   -!- SUBUNIT: Component of the MMS22L-TONSL complex, a complex at least
CC       composed of MMS22L and TONSL/NFKBIL2. Interacts with the MCM complex,
CC       the FACT complex and the RPA complex. Interacts with MCM5; the
CC       interaction is direct. Binds histones, with a strong preference for
CC       histone H3.1 (histones H3.1 and H3-4/H3.1t). Interacts (via ANK
CC       repeats) with histone H4; specifically binds histone H4 lacking
CC       methylation at 'Lys-20' (H4K20me0). May interact with DNAJC9; the
CC       interaction seems to be histone-dependent.
CC       {ECO:0000250|UniProtKB:Q96HA7}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q96HA7}.
CC       Chromosome {ECO:0000250|UniProtKB:Q96HA7}. Cytoplasm
CC       {ECO:0000250|UniProtKB:Q96HA7}. Note=Mainly nuclear. Localizes to DNA
CC       damage sites, accumulates at stressed replication forks. Recruited to
CC       stalled or collapsed replication forks following histone replacement by
CC       histone chaperones ASF1A and the CAF-1 complex: TONSL acts as histone
CC       reader that recognizes and binds newly synthesized histones.
CC       {ECO:0000250|UniProtKB:Q96HA7}.
CC   -!- DOMAIN: The ANK repeats mediate the interaction with the MCM complex
CC       and histones, while the LRR repeats mediate the interaction with
CC       MMS22L. {ECO:0000250|UniProtKB:Q96HA7}.
CC   -!- SIMILARITY: Belongs to the Tonsoku family. {ECO:0000305}.
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DR   EMBL; BC120084; AAI20085.1; -; mRNA.
DR   RefSeq; NP_001068656.1; NM_001075188.1.
DR   AlphaFoldDB; Q0P5G1; -.
DR   SMR; Q0P5G1; -.
DR   STRING; 9913.ENSBTAP00000010191; -.
DR   PaxDb; Q0P5G1; -.
DR   PRIDE; Q0P5G1; -.
DR   Ensembl; ENSBTAT00000010191; ENSBTAP00000010191; ENSBTAG00000007749.
DR   GeneID; 505102; -.
DR   KEGG; bta:505102; -.
DR   CTD; 4796; -.
DR   VEuPathDB; HostDB:ENSBTAG00000007749; -.
DR   VGNC; VGNC:36220; TONSL.
DR   eggNOG; KOG0504; Eukaryota.
DR   eggNOG; KOG4308; Eukaryota.
DR   GeneTree; ENSGT00940000160188; -.
DR   HOGENOM; CLU_002128_0_0_1; -.
DR   InParanoid; Q0P5G1; -.
DR   OMA; AEICEQQ; -.
DR   OrthoDB; 56880at2759; -.
DR   TreeFam; TF326440; -.
DR   Proteomes; UP000009136; Chromosome 14.
DR   Bgee; ENSBTAG00000007749; Expressed in nasopharynx and 106 other tissues.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005662; C:DNA replication factor A complex; IEA:Ensembl.
DR   GO; GO:0035101; C:FACT complex; IEA:Ensembl.
DR   GO; GO:0042555; C:MCM complex; IEA:Ensembl.
DR   GO; GO:0016604; C:nuclear body; IEA:Ensembl.
DR   GO; GO:0043596; C:nuclear replication fork; ISS:UniProtKB.
DR   GO; GO:0035861; C:site of double-strand break; ISS:UniProtKB.
DR   GO; GO:0042393; F:histone binding; ISS:UniProtKB.
DR   GO; GO:0140566; F:histone reader activity; ISS:UniProtKB.
DR   GO; GO:0000724; P:double-strand break repair via homologous recombination; ISS:UniProtKB.
DR   GO; GO:0031297; P:replication fork processing; ISS:UniProtKB.
DR   Gene3D; 1.25.40.10; -; 2.
DR   Gene3D; 1.25.40.20; -; 1.
DR   Gene3D; 3.80.10.10; -; 3.
DR   InterPro; IPR002110; Ankyrin_rpt.
DR   InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR   InterPro; IPR001611; Leu-rich_rpt.
DR   InterPro; IPR006553; Leu-rich_rpt_Cys-con_subtyp.
DR   InterPro; IPR032675; LRR_dom_sf.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR019734; TPR_repeat.
DR   Pfam; PF12796; Ank_2; 1.
DR   Pfam; PF13516; LRR_6; 3.
DR   Pfam; PF13181; TPR_8; 1.
DR   PRINTS; PR01415; ANKYRIN.
DR   SMART; SM00248; ANK; 3.
DR   SMART; SM00367; LRR_CC; 2.
DR   SMART; SM00028; TPR; 6.
DR   SUPFAM; SSF48403; SSF48403; 1.
DR   SUPFAM; SSF48452; SSF48452; 2.
DR   PROSITE; PS50297; ANK_REP_REGION; 1.
DR   PROSITE; PS50088; ANK_REPEAT; 3.
PE   2: Evidence at transcript level;
KW   ANK repeat; Chromatin regulator; Chromosome; Cytoplasm; DNA damage;
KW   DNA repair; Leucine-rich repeat; Methylation; Nucleus; Phosphoprotein;
KW   Reference proteome; Repeat; TPR repeat.
FT   CHAIN           1..1374
FT                   /note="Tonsoku-like protein"
FT                   /id="PRO_0000326633"
FT   REPEAT          27..60
FT                   /note="TPR 1"
FT   REPEAT          67..100
FT                   /note="TPR 2"
FT   REPEAT          107..140
FT                   /note="TPR 3"
FT   REPEAT          162..195
FT                   /note="TPR 4"
FT   REPEAT          202..235
FT                   /note="TPR 5"
FT   REPEAT          242..275
FT                   /note="TPR 6"
FT   REPEAT          311..344
FT                   /note="TPR 7"
FT   REPEAT          352..385
FT                   /note="TPR 8"
FT   REPEAT          526..558
FT                   /note="ANK 1"
FT   REPEAT          559..591
FT                   /note="ANK 2"
FT   REPEAT          595..627
FT                   /note="ANK 3"
FT   REPEAT          1065..1089
FT                   /note="LRR 1"
FT   REPEAT          1093..1121
FT                   /note="LRR 2"
FT   REPEAT          1124..1147
FT                   /note="LRR 3"
FT   REPEAT          1184..1207
FT                   /note="LRR 4"
FT   REPEAT          1243..1266
FT                   /note="LRR 5"
FT   REPEAT          1271..1296
FT                   /note="LRR 6"
FT   REPEAT          1327..1350
FT                   /note="LRR 7"
FT   REGION          460..508
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          668..777
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          829..908
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        464..502
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        668..690
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        734..755
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        877..900
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         711
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q96HA7"
FT   MOD_RES         788
FT                   /note="Omega-N-methylarginine"
FT                   /evidence="ECO:0000250|UniProtKB:Q6NZL6"
SQ   SEQUENCE   1374 AA;  150245 MW;  D75D0ED6B387DDB6 CRC64;
     MSLERELRQL SKAKTKAQRS GQLREEASVC HQLGELLASH GCYAEALREH QQELQLLETT
     DDPLGCAVAH RKIGERLAEM EDYSAALQHQ HRYLELACAL SNHVEQQRAW ATIGRTHLDI
     YDHHQSQDAL QQAQDAFEKS LAILDEKLQG SLPKRELSEM RTRIYLNLGL TCESLQQVAL
     CSAYFKKSIF LAEQNHLYED LFRARYNLGA IHWRRGQHSQ AMRCLEGARE CARVLKQAFL
     ESECCLLLSQ VLLDLGDFLA AKRALKKAYR LGSQKPLQKA SVCRTLKYVL AVVQLQQRLE
     ESEESDPEVA MGICEQLGDL FSKAGDFPKA AAAYQKQLRF AELLSRPGPE LAVIHVSLAA
     TLGDMKDHRQ AVHHYEAELK LQEGNPLEEA KTWLNIALSR EEAGDAYEVL ALCFQKALGC
     AQLAGQPQLQ RQILQHLHAV QLRLQPQEAP STETRLQELK AAGDEDEGDG EDEEDEEDDD
     ALEATELELS ESENEADASP PLEEDEELRG CLGRQRVNKW SRRNDVGETL LHRACIEGQL
     GRVQDLVRQG HPLNPRDYCG WTPLHEACNY GHLDIVRFLL DHGAAVDDPG GQGCDGITPL
     HDALNCGHFE VAELLIERGA SVTLRTRKGH NPLETLQQWV KLYGKDLDSE TQEKAAAMGR
     LLQAASLGRA PHSSQAPQTL PSNHLFDPET SPPSSPCPGT PEVCEASTRV SQGLAVSTVA
     RPRRSRHKVA SSSSSEGEDS AGPSQPTQKR PRHASPSLQT KAPMPGPASD REAATTSTSW
     AAYREAIRGV GSAQTCRLGP SPLRGPSEIP IPQAALIPQE ECLAGDWLEE DFPMSPGHRG
     RCPARPQSSG DGGRHRASGP GSDTARRPRA QARQSRLPYL ESWSTPVRAD RANSQATEPA
     RSPDVPRVVA PTGENPTTGH LPGQVLPPPI RVRVRVQDNL FLIPVPHREA HSVAWLAEQA
     AQRHYQASGL LPRLSLQKEG ALLAPQDPIP DVLQSNEEVL AEVTSWDLPP LRDRYRRACQ
     TLEQGEHQQV LQAVEHQGSA PTFSACSLAL RQAQLTPLLR ALKLHSALRE LRLAGNRLGD
     GCVAELLATL DTVPGLTLLD LSSNHLGPEG LRQLAAGLLG QTTLQNLEEL DLSMNPLGDG
     CGQALASILR ACPVLCTLHL QACGFGPGFF LSHQVALGSA FQDTKCLKTL SLSYNGLGPT
     ALGPVLGSLP AHSLLRLELS SVVTGKSDVG LTDPVVHYLS QEGCVLEHLS LSANHLGDKD
     VRALSRCLPL CPSLVSLDLS ANPEVSSAGL EELLSTLQKR PQGLSFLGLS GCAVQGPLGL
     DLWDKVVAQL QELQLCTRRL SAEDRNALHQ LLPSQLGPKV CTLDQGPKLF FRHL
 
 
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