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TONSL_HUMAN
ID   TONSL_HUMAN             Reviewed;        1378 AA.
AC   Q96HA7; B5MDP0; C9JKB1; C9JNV8; Q13006; Q9UGJ2;
DT   08-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT   08-APR-2008, sequence version 2.
DT   03-AUG-2022, entry version 176.
DE   RecName: Full=Tonsoku-like protein {ECO:0000303|PubMed:21055983};
DE   AltName: Full=Inhibitor of kappa B-related protein {ECO:0000303|PubMed:7738005};
DE            Short=I-kappa-B-related protein {ECO:0000303|PubMed:7738005};
DE            Short=IkappaBR {ECO:0000303|PubMed:7738005};
DE   AltName: Full=NF-kappa-B inhibitor-like protein 2;
DE   AltName: Full=Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2;
GN   Name=TONSL {ECO:0000303|PubMed:21055983, ECO:0000312|HGNC:HGNC:7801};
GN   Synonyms=IKBR {ECO:0000303|PubMed:7738005}, NFKBIL2;
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), SUBCELLULAR LOCATION, TISSUE
RP   SPECIFICITY, AND VARIANT SER-493.
RC   TISSUE=Cervix carcinoma;
RX   PubMed=7738005; DOI=10.1074/jbc.270.18.10680;
RA   Ray P., Zhang D.H., Elias J.A., Ray A.;
RT   "Cloning of a differentially expressed I kappa B-related protein.";
RL   J. Biol. Chem. 270:10680-10685(1995).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=16421571; DOI=10.1038/nature04406;
RA   Nusbaum C., Mikkelsen T.S., Zody M.C., Asakawa S., Taudien S., Garber M.,
RA   Kodira C.D., Schueler M.G., Shimizu A., Whittaker C.A., Chang J.L.,
RA   Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Allen N.R., Anderson S.,
RA   Asakawa T., Blechschmidt K., Bloom T., Borowsky M.L., Butler J., Cook A.,
RA   Corum B., DeArellano K., DeCaprio D., Dooley K.T., Dorris L. III,
RA   Engels R., Gloeckner G., Hafez N., Hagopian D.S., Hall J.L., Ishikawa S.K.,
RA   Jaffe D.B., Kamat A., Kudoh J., Lehmann R., Lokitsang T., Macdonald P.,
RA   Major J.E., Matthews C.D., Mauceli E., Menzel U., Mihalev A.H.,
RA   Minoshima S., Murayama Y., Naylor J.W., Nicol R., Nguyen C., O'Leary S.B.,
RA   O'Neill K., Parker S.C.J., Polley A., Raymond C.K., Reichwald K.,
RA   Rodriguez J., Sasaki T., Schilhabel M., Siddiqui R., Smith C.L.,
RA   Sneddon T.P., Talamas J.A., Tenzin P., Topham K., Venkataraman V., Wen G.,
RA   Yamazaki S., Young S.K., Zeng Q., Zimmer A.R., Rosenthal A., Birren B.W.,
RA   Platzer M., Shimizu N., Lander E.S.;
RT   "DNA sequence and analysis of human chromosome 8.";
RL   Nature 439:331-335(2006).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-1378 (ISOFORM 1), AND VARIANT
RP   VAL-714.
RC   TISSUE=Brain;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 64-671, AND VARIANT SER-493.
RX   PubMed=11246458; DOI=10.1017/s0003480000007910;
RA   Norman D.A., Barton P.J.;
RT   "Isolation, sequence, and chromosomal localisation of the human IkappaBR
RT   gene (NFKBIL2).";
RL   Ann. Hum. Genet. 64:15-23(2000).
RN   [5]
RP   SUBCELLULAR LOCATION.
RX   PubMed=9242696; DOI=10.1074/jbc.272.32.20191;
RA   Ray P., Yang L., Zhang D.H., Ghosh S.K., Ray A.;
RT   "Selective up-regulation of cytokine-induced RANTES gene expression in lung
RT   epithelial cells by overexpression of IkappaBR.";
RL   J. Biol. Chem. 272:20191-20197(1997).
RN   [6]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-719, AND IDENTIFICATION BY
RP   MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Cervix carcinoma;
RX   PubMed=18691976; DOI=10.1016/j.molcel.2008.07.007;
RA   Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R.,
RA   Greff Z., Keri G., Stemmann O., Mann M.;
RT   "Kinase-selective enrichment enables quantitative phosphoproteomics of the
RT   kinome across the cell cycle.";
RL   Mol. Cell 31:438-448(2008).
RN   [7]
RP   FUNCTION, AND IDENTIFICATION IN THE MMS22L-TONSL COMPLEX.
RX   PubMed=21113133; DOI=10.1038/emboj.2010.304;
RA   Piwko W., Olma M.H., Held M., Bianco J.N., Pedrioli P.G., Hofmann K.,
RA   Pasero P., Gerlich D.W., Peter M.;
RT   "RNAi-based screening identifies the Mms22L-Nfkbil2 complex as a novel
RT   regulator of DNA replication in human cells.";
RL   EMBO J. 29:4210-4222(2010).
RN   [8]
RP   FUNCTION, SUBCELLULAR LOCATION, AND IDENTIFICATION IN THE MMS22L-TONSL
RP   COMPLEX.
RX   PubMed=21055983; DOI=10.1016/j.molcel.2010.10.024;
RA   O'Donnell L., Panier S., Wildenhain J., Tkach J.M., Al-Hakim A.,
RA   Landry M.C., Escribano-Diaz C., Szilard R.K., Young J.T., Munro M.,
RA   Canny M.D., Kolas N.K., Zhang W., Harding S.M., Ylanko J., Mendez M.,
RA   Mullin M., Sun T., Habermann B., Datti A., Bristow R.G., Gingras A.C.,
RA   Tyers M.D., Brown G.W., Durocher D.;
RT   "The MMS22L-TONSL complex mediates recovery from replication stress and
RT   homologous recombination.";
RL   Mol. Cell 40:619-631(2010).
RN   [9]
RP   FUNCTION, SUBCELLULAR LOCATION, IDENTIFICATION IN THE MMS22L-TONSL COMPLEX,
RP   AND DOMAIN.
RX   PubMed=21055984; DOI=10.1016/j.molcel.2010.10.023;
RA   Duro E., Lundin C., Ask K., Sanchez-Pulido L., MacArtney T.J., Toth R.,
RA   Ponting C.P., Groth A., Helleday T., Rouse J.;
RT   "Identification of the MMS22L-TONSL complex that promotes homologous
RT   recombination.";
RL   Mol. Cell 40:632-644(2010).
RN   [10]
RP   FUNCTION, AND IDENTIFICATION IN THE MMS22L-TONSL COMPLEX.
RX   PubMed=21055985; DOI=10.1016/j.molcel.2010.10.022;
RA   O'Connell B.C., Adamson B., Lydeard J.R., Sowa M.E., Ciccia A.,
RA   Bredemeyer A.L., Schlabach M., Gygi S.P., Elledge S.J., Harper J.W.;
RT   "A genome-wide camptothecin sensitivity screen identifies a mammalian
RT   MMS22L-NFKBIL2 complex required for genomic stability.";
RL   Mol. Cell 40:645-657(2010).
RN   [11]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-719, AND IDENTIFICATION BY
RP   MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Cervix carcinoma;
RX   PubMed=20068231; DOI=10.1126/scisignal.2000475;
RA   Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L.,
RA   Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.;
RT   "Quantitative phosphoproteomics reveals widespread full phosphorylation
RT   site occupancy during mitosis.";
RL   Sci. Signal. 3:RA3-RA3(2010).
RN   [12]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=21269460; DOI=10.1186/1752-0509-5-17;
RA   Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T.,
RA   Bennett K.L., Superti-Furga G., Colinge J.;
RT   "Initial characterization of the human central proteome.";
RL   BMC Syst. Biol. 5:17-17(2011).
RN   [13]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-719, AND IDENTIFICATION BY
RP   MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Cervix carcinoma, and Erythroleukemia;
RX   PubMed=23186163; DOI=10.1021/pr300630k;
RA   Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
RA   Mohammed S.;
RT   "Toward a comprehensive characterization of a human cancer cell
RT   phosphoproteome.";
RL   J. Proteome Res. 12:260-271(2013).
RN   [14]
RP   FUNCTION, SUBCELLULAR LOCATION, AND INTERACTION WITH MCM5.
RX   PubMed=26527279; DOI=10.1016/j.molcel.2015.08.005;
RA   Campos E.I., Smits A.H., Kang Y.H., Landry S., Escobar T.M., Nayak S.,
RA   Ueberheide B.M., Durocher D., Vermeulen M., Hurwitz J., Reinberg D.;
RT   "Analysis of the histone H3.1 interactome: a suitable chaperone for the
RT   right event.";
RL   Mol. Cell 60:697-709(2015).
RN   [15]
RP   FUNCTION.
RX   PubMed=27797818; DOI=10.15252/embj.201593132;
RA   Piwko W., Mlejnkova L.J., Mutreja K., Ranjha L., Stafa D., Smirnov A.,
RA   Brodersen M.M., Zellweger R., Sturzenegger A., Janscak P., Lopes M.,
RA   Peter M., Cejka P.;
RT   "The MMS22L-TONSL heterodimer directly promotes RAD51-dependent
RT   recombination upon replication stress.";
RL   EMBO J. 35:2584-2601(2016).
RN   [16]
RP   FUNCTION, AND SUBCELLULAR LOCATION.
RX   PubMed=29478807; DOI=10.1016/j.molcel.2018.01.031;
RA   Huang T.H., Fowler F., Chen C.C., Shen Z.J., Sleckman B., Tyler J.K.;
RT   "The histone chaperones ASF1 and CAF-1 promote MMS22L-TONSL-mediated Rad51
RT   loading onto ssDNA during homologous recombination in human cells.";
RL   Mol. Cell 69:879-892(2018).
RN   [17]
RP   INTERACTION WITH DNJC9; H3.1 AND H3.1T.
RX   PubMed=33857403; DOI=10.1016/j.molcel.2021.03.041;
RA   Hammond C.M., Bao H., Hendriks I.A., Carraro M., Garcia-Nieto A., Liu Y.,
RA   Reveron-Gomez N., Spanos C., Chen L., Rappsilber J., Nielsen M.L.,
RA   Patel D.J., Huang H., Groth A.;
RT   "DNAJC9 integrates heat shock molecular chaperones into the histone
RT   chaperone network.";
RL   Mol. Cell 0:0-0(2021).
RN   [18] {ECO:0007744|PDB:5JA4}
RP   X-RAY CRYSTALLOGRAPHY (2.42 ANGSTROMS) OF 512-692 IN COMPLEX WITH HISTONE
RP   H4, FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH HISTONE H4K20ME0,
RP   IDENTIFICATION IN THE MMS22L-TONSL COMPLEX, AND MUTAGENESIS OF GLU-530;
RP   ASP-559; TRP-563; GLU-568; ASN-571 AND ASP-604.
RX   PubMed=27338793; DOI=10.1038/nature18312;
RA   Saredi G., Huang H., Hammond C.M., Alabert C., Bekker-Jensen S., Forne I.,
RA   Reveron-Gomez N., Foster B.M., Mlejnkova L., Bartke T., Cejka P.,
RA   Mailand N., Imhof A., Patel D.J., Groth A.;
RT   "H4K20me0 marks post-replicative chromatin and recruits the TONSL-MMS22L
RT   DNA repair complex.";
RL   Nature 534:714-718(2016).
RN   [19]
RP   VARIANTS SEMDSP 110-TRP--LEU-1378 DEL; 154-GLN--LEU-1378 DEL; LYS-199;
RP   LYS-487; LYS-494; LEU-613; MET-653; 713-GLN--LEU-1378 DEL;
RP   803-GLN--LEU-1378 DEL; TRP-934 AND PRO-1197, AND INVOLVEMENT IN SEMDSP.
RX   PubMed=30773277; DOI=10.1016/j.ajhg.2019.01.007;
RG   University of Washington Center for Mendelian Genomics;
RG   Undiagnosed Diseases Network;
RA   Burrage L.C., Reynolds J.J., Baratang N.V., Phillips J.B., Wegner J.,
RA   McFarquhar A., Higgs M.R., Christiansen A.E., Lanza D.G., Seavitt J.R.,
RA   Jain M., Li X., Parry D.A., Raman V., Chitayat D., Chinn I.K.,
RA   Bertuch A.A., Karaviti L., Schlesinger A.E., Earl D., Bamshad M.,
RA   Savarirayan R., Doddapaneni H., Muzny D., Jhangiani S.N., Eng C.M.,
RA   Gibbs R.A., Bi W., Emrick L., Rosenfeld J.A., Postlethwait J.,
RA   Westerfield M., Dickinson M.E., Beaudet A.L., Ranza E., Huber C.,
RA   Cormier-Daire V., Shen W., Mao R., Heaney J.D., Orange J.S., Bertola D.,
RA   Yamamoto G.L., Baratela W.A.R., Butler M.G., Ali A., Adeli M., Cohn D.H.,
RA   Krakow D., Jackson A.P., Lees M., Offiah A.C., Carlston C.M., Carey J.C.,
RA   Stewart G.S., Bacino C.A., Campeau P.M., Lee B.;
RT   "Bi-allelic variants in TONSL cause sponastrime dysplasia and a spectrum of
RT   skeletal dysplasia phenotypes.";
RL   Am. J. Hum. Genet. 104:422-438(2019).
RN   [20]
RP   INVOLVEMENT IN SEMDSP, FUNCTION, VARIANTS SEMDSP HIS-42; ASN-174; HIS-364;
RP   LYS-487; 511-GLN--LEU-1378 DEL; LYS-539; GLN-558; TRP-934;
RP   969-TYR--LEU-1378 DEL; ARG-973 AND GLN-1288, AND CHARACTERIZATION OF
RP   VARIANTS SEMDSP ASN-174; HIS-364; LYS-539; GLN-558; TRP-934 AND ARG-973.
RX   PubMed=30773278; DOI=10.1016/j.ajhg.2019.01.009;
RA   Chang H.R., Cho S.Y., Lee J.H., Lee E., Seo J., Lee H.R., Cavalcanti D.P.,
RA   Maekitie O., Valta H., Girisha K.M., Lee C., Neethukrishna K.,
RA   Bhavani G.S., Shukla A., Nampoothiri S., Phadke S.R., Park M.J.,
RA   Ikegawa S., Wang Z., Higgs M.R., Stewart G.S., Jung E., Lee M.S.,
RA   Park J.H., Lee E.A., Kim H., Myung K., Jeon W., Lee K., Kim D., Kim O.H.,
RA   Choi M., Lee H.W., Kim Y., Cho T.J.;
RT   "Hypomorphic mutations in TONSL cause sponastrime dysplasia.";
RL   Am. J. Hum. Genet. 104:439-453(2019).
RN   [21]
RP   VARIANTS SEMDSP ARG-430 AND ARG-1090.
RX   PubMed=32959051; DOI=10.1093/hmg/ddaa195;
RA   Micale L., Cialfi S., Fusco C., Cinque L., Castellana S., Biagini T.,
RA   Talora C., Notarangelo A., Bisceglia L., Taruscio D., Salvatore M.,
RA   Castori M.;
RT   "Novel TONSL variants cause SPONASTRIME dysplasia and associate with
RT   spontaneous chromosome breaks, defective cell proliferation and
RT   apoptosis.";
RL   Hum. Mol. Genet. 29:3122-3131(2020).
CC   -!- FUNCTION: Component of the MMS22L-TONSL complex, a complex that
CC       promotes homologous recombination-mediated repair of double-strand
CC       breaks (DSBs) at stalled or collapsed replication forks
CC       (PubMed:21055983, PubMed:21055984, PubMed:21055985, PubMed:21113133,
CC       PubMed:26527279, PubMed:27797818, PubMed:29478807, PubMed:27338793,
CC       PubMed:30773278). The MMS22L-TONSL complex is required to maintain
CC       genome integrity during DNA replication (PubMed:21055983,
CC       PubMed:21055984, PubMed:21055985). It mediates the assembly of RAD51
CC       filaments on single-stranded DNA (ssDNA): the MMS22L-TONSL complex is
CC       recruited to DSBs following histone replacement by histone chaperones
CC       and eviction of the replication protein A complex (RPA/RP-A) from DSBs
CC       (PubMed:21055983, PubMed:21055984, PubMed:21055985, PubMed:27797818,
CC       PubMed:29478807). Following recruitment to DSBs, the TONSL-MMS22L
CC       complex promotes recruitment of RAD51 filaments and subsequent
CC       homologous recombination (PubMed:27797818, PubMed:29478807). Within the
CC       complex, TONSL acts as histone reader, which recognizes and binds newly
CC       synthesized histones following their replacement by histone chaperones
CC       (PubMed:29478807, PubMed:27338793). Specifically binds histone H4
CC       lacking methylation at 'Lys-20' (H4K20me0) and histone H3.1
CC       (PubMed:27338793). {ECO:0000269|PubMed:21055983,
CC       ECO:0000269|PubMed:21055984, ECO:0000269|PubMed:21055985,
CC       ECO:0000269|PubMed:21113133, ECO:0000269|PubMed:26527279,
CC       ECO:0000269|PubMed:27338793, ECO:0000269|PubMed:27797818,
CC       ECO:0000269|PubMed:29478807, ECO:0000269|PubMed:30773278}.
CC   -!- SUBUNIT: Component of the MMS22L-TONSL complex, a complex at least
CC       composed of MMS22L and TONSL/NFKBIL2 (PubMed:21055983, PubMed:21055984,
CC       PubMed:21055985, PubMed:21113133, PubMed:27338793). Interacts with the
CC       MCM complex, the FACT complex and the RPA complex (PubMed:21055983,
CC       PubMed:21055984, PubMed:26527279). Interacts with MCM5; the interaction
CC       is direct (PubMed:26527279). Binds histones, with a strong preference
CC       for histone H3.1 (histones H3.1 and H3-4/H3.1t) (PubMed:21055983,
CC       PubMed:21055984, PubMed:26527279, PubMed:33857403). Interacts (via ANK
CC       repeats) with histone H4; specifically binds histone H4 lacking
CC       methylation at 'Lys-20' (H4K20me0) (PubMed:27338793). May interact with
CC       DNAJC9; the interaction seems to be histone-dependent
CC       (PubMed:33857403). {ECO:0000269|PubMed:21055983,
CC       ECO:0000269|PubMed:21055984, ECO:0000269|PubMed:21055985,
CC       ECO:0000269|PubMed:21113133, ECO:0000269|PubMed:26527279,
CC       ECO:0000269|PubMed:27338793, ECO:0000269|PubMed:33857403}.
CC   -!- INTERACTION:
CC       Q96HA7; Q6ZRQ5: MMS22L; NbExp=5; IntAct=EBI-1052467, EBI-718662;
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:21055983,
CC       ECO:0000269|PubMed:21055984, ECO:0000269|PubMed:9242696}. Chromosome
CC       {ECO:0000269|PubMed:21055983, ECO:0000269|PubMed:21055984,
CC       ECO:0000269|PubMed:26527279, ECO:0000269|PubMed:27338793,
CC       ECO:0000269|PubMed:29478807}. Cytoplasm {ECO:0000269|PubMed:7738005}.
CC       Note=Mainly nuclear (PubMed:21055983, PubMed:21055984). Localizes to
CC       DNA damage sites, accumulates at stressed replication forks
CC       (PubMed:21055983, PubMed:21055984, PubMed:26527279, PubMed:27338793).
CC       Recruited to stalled or collapsed replication forks following histone
CC       replacement by histone chaperones ASF1A and the CAF-1 complex: TONSL
CC       acts as histone reader that recognizes and binds newly synthesized
CC       histones (PubMed:29478807). {ECO:0000269|PubMed:21055983,
CC       ECO:0000269|PubMed:21055984, ECO:0000269|PubMed:26527279,
CC       ECO:0000269|PubMed:27338793, ECO:0000269|PubMed:29478807}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q96HA7-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q96HA7-2; Sequence=VSP_032686;
CC   -!- TISSUE SPECIFICITY: Expressed in heart, skeletal muscle and tracheal
CC       epithelial cells. {ECO:0000269|PubMed:7738005}.
CC   -!- DOMAIN: The ANK repeats mediate the interaction with the MCM complex
CC       and histones, while the LRR repeats mediate the interaction with
CC       MMS22L. {ECO:0000269|PubMed:21055984}.
CC   -!- DISEASE: Spondyloepimetaphyseal dysplasia, sponastrime type (SEMDSP)
CC       [MIM:271510]: An autosomal recessive bone disease characterized by
CC       spine abnormalities, mid-face hypoplasia with a depressed nasal bridge,
CC       and striation of the metaphyses. Additional features include
CC       disproportionate short stature with exaggerated lumbar lordosis,
CC       scoliosis, coxa vara, limited elbow extension, small dysplastic
CC       epiphyses, childhood cataracts, short dental roots, and
CC       hypogammaglobulinemia. Disease severity and clinical manifestations are
CC       variable. Some patients have intellectual disability.
CC       {ECO:0000269|PubMed:30773277, ECO:0000269|PubMed:30773278,
CC       ECO:0000269|PubMed:32959051}. Note=The disease is caused by variants
CC       affecting the gene represented in this entry.
CC   -!- SIMILARITY: Belongs to the Tonsoku family. {ECO:0000305}.
CC   -!- CAUTION: Was reported to share sequence similarities with IKBKB and
CC       therefore named 'NF-kappa-B inhibitor-like protein 2' (PubMed:7738005).
CC       However, the sequence similarity is remote and effects as regulator of
CC       NF-kappa-B are probably indirect and require additional evidence
CC       (PubMed:9242696). {ECO:0000305|PubMed:7738005,
CC       ECO:0000305|PubMed:9242696}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAA85819.1; Type=Frameshift; Evidence={ECO:0000305};
CC       Sequence=AAH08782.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC       Sequence=CAB63467.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; U16258; AAA85819.1; ALT_FRAME; mRNA.
DR   EMBL; AC084125; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AF205589; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC008782; AAH08782.1; ALT_INIT; mRNA.
DR   EMBL; AJ249601; CAB63467.1; ALT_SEQ; Genomic_DNA.
DR   CCDS; CCDS34968.2; -. [Q96HA7-1]
DR   PIR; A56429; A56429.
DR   RefSeq; NP_038460.4; NM_013432.4. [Q96HA7-1]
DR   PDB; 5JA4; X-ray; 2.42 A; D=512-692.
DR   PDBsum; 5JA4; -.
DR   AlphaFoldDB; Q96HA7; -.
DR   SMR; Q96HA7; -.
DR   BioGRID; 110863; 97.
DR   IntAct; Q96HA7; 32.
DR   MINT; Q96HA7; -.
DR   STRING; 9606.ENSP00000386239; -.
DR   iPTMnet; Q96HA7; -.
DR   MetOSite; Q96HA7; -.
DR   PhosphoSitePlus; Q96HA7; -.
DR   BioMuta; TONSL; -.
DR   DMDM; 182662416; -.
DR   EPD; Q96HA7; -.
DR   jPOST; Q96HA7; -.
DR   MassIVE; Q96HA7; -.
DR   MaxQB; Q96HA7; -.
DR   PaxDb; Q96HA7; -.
DR   PeptideAtlas; Q96HA7; -.
DR   PRIDE; Q96HA7; -.
DR   ProteomicsDB; 76723; -. [Q96HA7-1]
DR   ProteomicsDB; 76724; -. [Q96HA7-2]
DR   Antibodypedia; 14893; 207 antibodies from 21 providers.
DR   DNASU; 4796; -.
DR   Ensembl; ENST00000409379.8; ENSP00000386239.3; ENSG00000160949.18. [Q96HA7-1]
DR   GeneID; 4796; -.
DR   KEGG; hsa:4796; -.
DR   MANE-Select; ENST00000409379.8; ENSP00000386239.3; NM_013432.5; NP_038460.4.
DR   UCSC; uc011llg.3; human. [Q96HA7-1]
DR   CTD; 4796; -.
DR   DisGeNET; 4796; -.
DR   GeneCards; TONSL; -.
DR   HGNC; HGNC:7801; TONSL.
DR   HPA; ENSG00000160949; Tissue enhanced (bone).
DR   MalaCards; TONSL; -.
DR   MIM; 271510; phenotype.
DR   MIM; 604546; gene.
DR   neXtProt; NX_Q96HA7; -.
DR   OpenTargets; ENSG00000160949; -.
DR   Orphanet; 93357; SPONASTRIME dysplasia.
DR   PharmGKB; PA31605; -.
DR   VEuPathDB; HostDB:ENSG00000160949; -.
DR   eggNOG; KOG0504; Eukaryota.
DR   eggNOG; KOG4308; Eukaryota.
DR   GeneTree; ENSGT00940000160188; -.
DR   HOGENOM; CLU_002128_0_0_1; -.
DR   InParanoid; Q96HA7; -.
DR   OMA; AEICEQQ; -.
DR   OrthoDB; 56880at2759; -.
DR   PhylomeDB; Q96HA7; -.
DR   TreeFam; TF326440; -.
DR   PathwayCommons; Q96HA7; -.
DR   SignaLink; Q96HA7; -.
DR   BioGRID-ORCS; 4796; 785 hits in 1088 CRISPR screens.
DR   ChiTaRS; TONSL; human.
DR   GenomeRNAi; 4796; -.
DR   Pharos; Q96HA7; Tbio.
DR   PRO; PR:Q96HA7; -.
DR   Proteomes; UP000005640; Chromosome 8.
DR   RNAct; Q96HA7; protein.
DR   Bgee; ENSG00000160949; Expressed in mucosa of transverse colon and 94 other tissues.
DR   ExpressionAtlas; Q96HA7; baseline and differential.
DR   Genevisible; Q96HA7; HS.
DR   GO; GO:0005737; C:cytoplasm; TAS:ProtInc.
DR   GO; GO:0016604; C:nuclear body; IDA:HPA.
DR   GO; GO:0043596; C:nuclear replication fork; IDA:UniProtKB.
DR   GO; GO:0005654; C:nucleoplasm; IDA:HPA.
DR   GO; GO:0035861; C:site of double-strand break; IDA:UniProtKB.
DR   GO; GO:0042393; F:histone binding; IDA:UniProtKB.
DR   GO; GO:0140566; F:histone reader activity; IDA:UniProtKB.
DR   GO; GO:0000724; P:double-strand break repair via homologous recombination; IDA:UniProtKB.
DR   GO; GO:0031297; P:replication fork processing; IMP:UniProtKB.
DR   Gene3D; 1.25.40.10; -; 2.
DR   Gene3D; 1.25.40.20; -; 1.
DR   Gene3D; 3.80.10.10; -; 3.
DR   InterPro; IPR002110; Ankyrin_rpt.
DR   InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR   InterPro; IPR001611; Leu-rich_rpt.
DR   InterPro; IPR032675; LRR_dom_sf.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR019734; TPR_repeat.
DR   Pfam; PF12796; Ank_2; 1.
DR   Pfam; PF13516; LRR_6; 2.
DR   Pfam; PF13181; TPR_8; 1.
DR   PRINTS; PR01415; ANKYRIN.
DR   SMART; SM00248; ANK; 3.
DR   SMART; SM00028; TPR; 7.
DR   SUPFAM; SSF48403; SSF48403; 1.
DR   SUPFAM; SSF48452; SSF48452; 3.
DR   PROSITE; PS50297; ANK_REP_REGION; 1.
DR   PROSITE; PS50088; ANK_REPEAT; 3.
DR   PROSITE; PS50293; TPR_REGION; 2.
PE   1: Evidence at protein level;
KW   3D-structure; Alternative splicing; ANK repeat; Chromatin regulator;
KW   Chromosome; Cytoplasm; Disease variant; DNA damage; DNA repair; Dwarfism;
KW   Leucine-rich repeat; Methylation; Nucleus; Phosphoprotein;
KW   Reference proteome; Repeat; TPR repeat.
FT   CHAIN           1..1378
FT                   /note="Tonsoku-like protein"
FT                   /id="PRO_0000326634"
FT   REPEAT          27..60
FT                   /note="TPR 1"
FT   REPEAT          67..100
FT                   /note="TPR 2"
FT   REPEAT          107..147
FT                   /note="TPR 3"
FT   REPEAT          162..195
FT                   /note="TPR 4"
FT   REPEAT          202..235
FT                   /note="TPR 5"
FT   REPEAT          242..275
FT                   /note="TPR 6"
FT   REPEAT          311..344
FT                   /note="TPR 7"
FT   REPEAT          352..385
FT                   /note="TPR 8"
FT   REPEAT          528..557
FT                   /note="ANK 1"
FT   REPEAT          561..590
FT                   /note="ANK 2"
FT   REPEAT          597..626
FT                   /note="ANK 3"
FT   REPEAT          1069..1093
FT                   /note="LRR 1"
FT   REPEAT          1097..1122
FT                   /note="LRR 2"
FT   REPEAT          1128..1151
FT                   /note="LRR 3"
FT   REPEAT          1188..1212
FT                   /note="LRR 4"
FT   REPEAT          1247..1270
FT                   /note="LRR 5"
FT   REPEAT          1275..1300
FT                   /note="LRR 6"
FT   REPEAT          1331..1354
FT                   /note="LRR 7"
FT   REGION          475..524
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          667..789
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          842..933
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        485..505
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        506..524
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        669..690
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        735..750
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        862..876
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        881..919
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         719
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0007744|PubMed:18691976,
FT                   ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163"
FT   MOD_RES         797
FT                   /note="Omega-N-methylarginine"
FT                   /evidence="ECO:0000250|UniProtKB:Q6NZL6"
FT   VAR_SEQ         631..641
FT                   /note="GLSPLETLQQW -> ASARWRRCSSG (in isoform 2)"
FT                   /evidence="ECO:0000303|PubMed:7738005"
FT                   /id="VSP_032686"
FT   VARIANT         42
FT                   /note="R -> H (in SEMDSP; unknown pathological
FT                   significance; dbSNP:rs778155094)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083007"
FT   VARIANT         110..1378
FT                   /note="Missing (in SEMDSP; disease phenotype includes
FT                   immunologic and hematologic abnormalities)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083008"
FT   VARIANT         154..1378
FT                   /note="Missing (in SEMDSP)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083009"
FT   VARIANT         174
FT                   /note="S -> N (in SEMDSP; decreased function in double-
FT                   strand break repair via homologous recombination)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083010"
FT   VARIANT         199
FT                   /note="E -> K (in SEMDSP; disease phenotype includes
FT                   immunologic and hematologic abnormalities;
FT                   dbSNP:rs1335783881)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083011"
FT   VARIANT         364
FT                   /note="D -> H (in SEMDSP; unknown pathological
FT                   significance; decreased function in double-strand break
FT                   repair via homologous recombination)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083012"
FT   VARIANT         430
FT                   /note="Q -> R (in SEMDSP; unknown pathological
FT                   significance; genomic instability; when associated with R-
FT                   1090)"
FT                   /evidence="ECO:0000269|PubMed:32959051"
FT                   /id="VAR_086303"
FT   VARIANT         487
FT                   /note="E -> K (in SEMDSP; unknown pathological
FT                   significance; dbSNP:rs563710728)"
FT                   /evidence="ECO:0000269|PubMed:30773277,
FT                   ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083013"
FT   VARIANT         488
FT                   /note="V -> M (in dbSNP:rs2229314)"
FT                   /id="VAR_042411"
FT   VARIANT         493
FT                   /note="G -> S (in dbSNP:rs2229315)"
FT                   /evidence="ECO:0000269|PubMed:11246458,
FT                   ECO:0000269|PubMed:7738005"
FT                   /id="VAR_042412"
FT   VARIANT         494
FT                   /note="E -> K (in SEMDSP; unknown pathological
FT                   significance; dbSNP:rs775551492)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083014"
FT   VARIANT         511..1378
FT                   /note="Missing (in SEMDSP)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083015"
FT   VARIANT         539
FT                   /note="E -> K (in SEMDSP; decreased function in double-
FT                   strand break repair via homologous recombination;
FT                   dbSNP:rs370196996)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083016"
FT   VARIANT         558
FT                   /note="R -> Q (in SEMDSP; decreased function in double-
FT                   strand break repair via homologous recombination; decreased
FT                   protein amount in patient cells; dbSNP:rs777654833)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083017"
FT   VARIANT         613
FT                   /note="V -> L (in SEMDSP; disease phenotype includes
FT                   immunologic and hematologic abnormalities; unknown
FT                   pathological significance; dbSNP:rs778625348)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083018"
FT   VARIANT         653
FT                   /note="T -> M (in SEMDSP; disease phenotype includes
FT                   primary aphakia and absent pupils; dbSNP:rs755055463)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083019"
FT   VARIANT         713..1378
FT                   /note="Missing (in SEMDSP; disease phenotype includes
FT                   primary aphakia and absent pupils)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083020"
FT   VARIANT         714
FT                   /note="A -> V (in dbSNP:rs7830832)"
FT                   /evidence="ECO:0000269|PubMed:15489334"
FT                   /id="VAR_042413"
FT   VARIANT         803..1378
FT                   /note="Missing (in SEMDSP)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083021"
FT   VARIANT         934
FT                   /note="R -> W (in SEMDSP; decreased function in double-
FT                   strand break repair via homologous recombination;
FT                   dbSNP:rs755575416)"
FT                   /evidence="ECO:0000269|PubMed:30773277,
FT                   ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083022"
FT   VARIANT         969..1378
FT                   /note="Missing (in SEMDSP)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083023"
FT   VARIANT         973
FT                   /note="G -> R (in SEMDSP; decreased function in double-
FT                   strand break repair via homologous recombination;
FT                   dbSNP:rs1342198195)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083024"
FT   VARIANT         1090
FT                   /note="L -> R (in SEMDSP; unknown pathological
FT                   significance; genomic instability; when associated with R-
FT                   430)"
FT                   /evidence="ECO:0000269|PubMed:32959051"
FT                   /id="VAR_086304"
FT   VARIANT         1197
FT                   /note="S -> P (in SEMDSP; dbSNP:rs1586681982)"
FT                   /evidence="ECO:0000269|PubMed:30773277"
FT                   /id="VAR_083025"
FT   VARIANT         1276
FT                   /note="P -> L (in dbSNP:rs4925856)"
FT                   /id="VAR_042414"
FT   VARIANT         1288
FT                   /note="E -> Q (in SEMDSP; unknown pathological
FT                   significance; dbSNP:rs1554878402)"
FT                   /evidence="ECO:0000269|PubMed:30773278"
FT                   /id="VAR_083026"
FT   MUTAGEN         530
FT                   /note="E->A: Abolished interaction with histone H4 and
FT                   recruitment to replication forks without affecting
FT                   interaction with MMS22L."
FT                   /evidence="ECO:0000269|PubMed:27338793"
FT   MUTAGEN         559
FT                   /note="D->A: Abolished interaction with histone H4 and
FT                   recruitment to replication forks without affecting
FT                   interaction with MMS22L."
FT                   /evidence="ECO:0000269|PubMed:27338793"
FT   MUTAGEN         563
FT                   /note="W->A: Abolished interaction with histone H4 and
FT                   recruitment to replication forks without affecting
FT                   interaction with MMS22L."
FT                   /evidence="ECO:0000269|PubMed:27338793"
FT   MUTAGEN         568
FT                   /note="E->A: Abolished interaction with histone H4 and
FT                   recruitment to replication forks without affecting
FT                   interaction with MMS22L."
FT                   /evidence="ECO:0000269|PubMed:27338793"
FT   MUTAGEN         571
FT                   /note="N->A: Abolished interaction with histone H4 and
FT                   recruitment to replication forks without affecting
FT                   interaction with MMS22L."
FT                   /evidence="ECO:0000269|PubMed:27338793"
FT   MUTAGEN         604
FT                   /note="D->A: Abolished interaction with histone H4 and
FT                   recruitment to replication forks without affecting
FT                   interaction with MMS22L."
FT                   /evidence="ECO:0000269|PubMed:27338793"
FT   CONFLICT        193..194
FT                   /note="EQ -> DE (in Ref. 1; AAA85819)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        268
FT                   /note="A -> R (in Ref. 1; AAA85819)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        427
FT                   /note="P -> A (in Ref. 4; CAB63467)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        482
FT                   /note="A -> R (in Ref. 1; AAA85819)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        516
FT                   /note="R -> P (in Ref. 1; AAA85819)"
FT                   /evidence="ECO:0000305"
FT   HELIX           532..539
FT                   /evidence="ECO:0007829|PDB:5JA4"
FT   HELIX           542..551
FT                   /evidence="ECO:0007829|PDB:5JA4"
FT   HELIX           565..572
FT                   /evidence="ECO:0007829|PDB:5JA4"
FT   HELIX           575..583
FT                   /evidence="ECO:0007829|PDB:5JA4"
FT   TURN            594..597
FT                   /evidence="ECO:0007829|PDB:5JA4"
FT   HELIX           601..607
FT                   /evidence="ECO:0007829|PDB:5JA4"
FT   HELIX           611..616
FT                   /evidence="ECO:0007829|PDB:5JA4"
FT   HELIX           634..644
FT                   /evidence="ECO:0007829|PDB:5JA4"
FT   HELIX           651..668
FT                   /evidence="ECO:0007829|PDB:5JA4"
SQ   SEQUENCE   1378 AA;  150929 MW;  8E3013861864DCDE CRC64;
     MSLERELRQL SKAKAKAQRA GQRREEAALC HQLGELLAGH GRYAEALEQH WQELQLRERA
     DDPLGCAVAH RKIGERLAEM EDYPAALQHQ HQYLELAHSL RNHTELQRAW ATIGRTHLDI
     YDHCQSRDAL LQAQAAFEKS LAIVDEELEG TLAQGELNEM RTRLYLNLGL TFESLQQTAL
     CNDYFRKSIF LAEQNHLYED LFRARYNLGT IHWRAGQHSQ AMRCLEGARE CAHTMRKRFM
     ESECCVVIAQ VLQDLGDFLA AKRALKKAYR LGSQKPVQRA AICQNLQHVL AVVRLQQQLE
     EAEGRDPQGA MVICEQLGDL FSKAGDFPRA AEAYQKQLRF AELLDRPGAE RAIIHVSLAT
     TLGDMKDHHG AVRHYEEELR LRSGNVLEEA KTWLNIALSR EEAGDAYELL APCFQKALSC
     AQQAQRPQLQ RQVLQHLHTV QLRLQPQEAP ETETRLRELS VAEDEDEEEE AEEAAATAES
     EALEAGEVEL SEGEDDTDGL TPQLEEDEEL QGHLGRRKGS KWNRRNDMGE TLLHRACIEG
     QLRRVQDLVR QGHPLNPRDY CGWTPLHEAC NYGHLEIVRF LLDHGAAVDD PGGQGCEGIT
     PLHDALNCGH FEVAELLLER GASVTLRTRK GLSPLETLQQ WVKLYRRDLD LETRQKARAM
     EMLLQAAASG QDPHSSQAFH TPSSLLFDPE TSPPLSPCPE PPSNSTRLPE ASQAHVRVSP
     GQAAPAMARP RRSRHGPASS SSSSEGEDSA GPARPSQKRP RCSATAQRVA AWTPGPASNR
     EAATASTSRA AYQAAIRGVG SAQSRLGPGP PRGHSKALAP QAALIPEEEC LAGDWLELDM
     PLTRSRRPRP RGTGDNRRPS STSGSDSEES RPRARAKQVR LTCMQSCSAP VNAGPSSLAS
     EPPGSPSTPR VSEPSGDSSA AGQPLGPAPP PPIRVRVQVQ DHLFLIPVPH SSDTHSVAWL
     AEQAAQRYYQ TCGLLPRLTL RKEGALLAPQ DLIPDVLQSN DEVLAEVTSW DLPPLTDRYR
     RACQSLGQGE HQQVLQAVEL QGLGLSFSAC SLALDQAQLT PLLRALKLHT ALRELRLAGN
     RLGDKCVAEL VAALGTMPSL ALLDLSSNHL GPEGLRQLAM GLPGQATLQS LEELDLSMNP
     LGDGCGQSLA SLLHACPLLS TLRLQACGFG PSFFLSHQTA LGSAFQDAEH LKTLSLSYNA
     LGAPALARTL QSLPAGTLLH LELSSVAAGK GDSDLMEPVF RYLAKEGCAL AHLTLSANHL
     GDKAVRDLCR CLSLCPSLIS LDLSANPEIS CASLEELLST LQKRPQGLSF LGLSGCAVQG
     PLGLGLWDKI AAQLRELQLC SRRLCAEDRD ALRQLQPSRP GPGECTLDHG SKLFFRRL
 
 
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