TR164_ORYSJ
ID TR164_ORYSJ Reviewed; 262 AA.
AC Q7Y0D4; A0A0P0W3G7;
DT 15-JUN-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 133.
DE RecName: Full=Thioredoxin-like protein HCF164, chloroplastic;
DE AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 164;
DE Flags: Precursor;
GN OrderedLocusNames=Os03g0767500, LOC_Os03g55820;
GN ORFNames=OSJNBa0079B15.5, OSJNBb0106M04.22;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19825616; DOI=10.1093/mp/ssn076;
RA Chibani K., Wingsle G., Jacquot J.P., Gelhaye E., Rouhier N.;
RT "Comparative genomic study of the thioredoxin family in photosynthetic
RT organisms with emphasis on Populus trichocarpa.";
RL Mol. Plant 2:308-322(2009).
CC -!- FUNCTION: Probable thiol-disulfide oxidoreductase that may participate
CC in various redox reactions in the chloroplast.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the thioredoxin family. {ECO:0000305}.
CC -!- CAUTION: The active site contains a CEVC motif wich differs from the
CC conserved CGPC motif. {ECO:0000305}.
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DR EMBL; AC099043; AAP50950.1; -; Genomic_DNA.
DR EMBL; AC107207; AAR87322.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF99061.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13301.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86566.1; -; Genomic_DNA.
DR EMBL; AK098932; BAG93818.1; -; mRNA.
DR EMBL; AK104279; BAG96565.1; -; mRNA.
DR RefSeq; XP_015630895.1; XM_015775409.1.
DR AlphaFoldDB; Q7Y0D4; -.
DR SMR; Q7Y0D4; -.
DR STRING; 4530.OS03T0767500-01; -.
DR PaxDb; Q7Y0D4; -.
DR PRIDE; Q7Y0D4; -.
DR EnsemblPlants; Os03t0767500-01; Os03t0767500-01; Os03g0767500.
DR GeneID; 4334234; -.
DR Gramene; Os03t0767500-01; Os03t0767500-01; Os03g0767500.
DR KEGG; osa:4334234; -.
DR eggNOG; KOG0907; Eukaryota.
DR HOGENOM; CLU_064833_1_1_1; -.
DR InParanoid; Q7Y0D4; -.
DR OMA; CIAPPDS; -.
DR OrthoDB; 1584124at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q7Y0D4; OS.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IBA:GO_Central.
DR GO; GO:0016671; F:oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; IBA:GO_Central.
DR GO; GO:0010190; P:cytochrome b6f complex assembly; IBA:GO_Central.
DR InterPro; IPR036249; Thioredoxin-like_sf.
DR InterPro; IPR013766; Thioredoxin_domain.
DR InterPro; IPR044241; TxlA/HCF164.
DR PANTHER; PTHR47353; PTHR47353; 1.
DR Pfam; PF00085; Thioredoxin; 1.
DR SUPFAM; SSF52833; SSF52833; 1.
DR PROSITE; PS51352; THIOREDOXIN_2; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Disulfide bond; Electron transport; Plastid;
KW Redox-active center; Reference proteome; Transit peptide; Transport.
FT TRANSIT 1..54
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 55..262
FT /note="Thioredoxin-like protein HCF164, chloroplastic"
FT /id="PRO_0000394843"
FT DOMAIN 78..230
FT /note="Thioredoxin"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00691"
FT REGION 47..90
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 61..76
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT ACT_SITE 151
FT /note="Nucleophile"
FT /evidence="ECO:0000255"
FT ACT_SITE 154
FT /note="Nucleophile"
FT /evidence="ECO:0000255"
FT DISULFID 151..154
FT /note="Redox-active"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00691"
SQ SEQUENCE 262 AA; 28572 MW; 3D5FE7070ABF47C9 CRC64;
MAVVASRCTG LLLPDLGASL AGFRRRRSTP ASSLSFRPRR ARRRLGSLSC IAPPDSAEPQ
TDEPAAKDDS TEDKAEASSA SQDAGNPTFP NKDLSRRIAL ASTIGAVGLF AYQRLDFGGV
SLKDLAANAT PYEEALSNGK PTVVEFYADW CEVCRELAPD VYKVEQQYKD RVNFVMLNVD
NTKWEQELDE FGVEGIPHFA FLDKEGNEEG NVVGRLPKQY FLDNVVALAS GEPTVPHARV
VGQFSSAESR KVHQVADPRS HG
