TRAB1_ORYSJ
ID TRAB1_ORYSJ Reviewed; 374 AA.
AC Q6ZDF3; A0A0P0XGN7; A0A0P0XH09; Q7X974; Q8RYA2; Q9SLX6;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 23-MAY-2018, sequence version 2.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=bZIP transcription factor TRAB1 {ECO:0000305};
DE AltName: Full=Protein ABA RESPONSIVE ELEMENT 1 {ECO:0000305};
GN Name=TRAB1 {ECO:0000303|PubMed:10611387};
GN Synonyms=ABA1 {ECO:0000312|EMBL:AAP92748.1};
GN OrderedLocusNames=Os08g0472000 {ECO:0000312|EMBL:BAT05851.1},
GN LOC_Os08g36790 {ECO:0000305};
GN ORFNames=P0013B04.7 {ECO:0000312|EMBL:BAD09357.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 41-374 AND 285-374.
RA Quanhong Y., Rihe P., Aisheng X.;
RT "A bZIP transcription factor may act as ABA signal.";
RL Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 53-374, FUNCTION, TISSUE SPECIFICITY,
RP INDUCTION, AND INTERACTION WITH VP1.
RC STRAIN=cv. Nipponbare;
RX PubMed=10611387; DOI=10.1073/pnas.96.26.15348;
RA Hobo T., Kowyama Y., Hattori T.;
RT "A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-
RT induced transcription.";
RL Proc. Natl. Acad. Sci. U.S.A. 96:15348-15353(1999).
CC -!- FUNCTION: Transcription activator that mediates abscisic acid (ABA)
CC signaling. Binds specifically to the ABA-responsive element (ABRE) of
CC the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
CC -!- SUBUNIT: Interacts with VP1 (via N-terminus).
CC {ECO:0000269|PubMed:10611387}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, leaves and embryos.
CC {ECO:0000269|PubMed:10611387}.
CC -!- INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
CC -!- SIMILARITY: Belongs to the bZIP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL86016.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=AAP92748.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAA83740.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAD09357.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAF23932.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAT05851.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAT05852.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB023288; BAA83740.1; ALT_INIT; mRNA.
DR EMBL; AY072713; AAL86016.1; ALT_INIT; mRNA.
DR EMBL; AY323482; AAP92748.1; ALT_INIT; mRNA.
DR EMBL; AP004457; BAD09357.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP008214; BAF23932.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014964; BAT05851.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014964; BAT05852.1; ALT_SEQ; Genomic_DNA.
DR RefSeq; XP_015650926.1; XM_015795440.1.
DR AlphaFoldDB; Q6ZDF3; -.
DR SMR; Q6ZDF3; -.
DR IntAct; Q6ZDF3; 1.
DR STRING; 4530.OS08T0471950-00; -.
DR PaxDb; Q6ZDF3; -.
DR PRIDE; Q6ZDF3; -.
DR GeneID; 4345807; -.
DR KEGG; osa:4345807; -.
DR eggNOG; ENOG502QPP6; Eukaryota.
DR HOGENOM; CLU_043238_1_1_1; -.
DR InParanoid; Q6ZDF3; -.
DR OrthoDB; 822545at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:UniProtKB.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IDA:UniProtKB.
DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IDA:UniProtKB.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:UniProtKB.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR043452; BZIP46-like.
DR InterPro; IPR046347; bZIP_sf.
DR PANTHER; PTHR22952; PTHR22952; 1.
DR Pfam; PF00170; bZIP_1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
PE 1: Evidence at protein level;
KW Abscisic acid signaling pathway; Activator; DNA-binding; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..374
FT /note="bZIP transcription factor TRAB1"
FT /id="PRO_0000377394"
FT DOMAIN 286..349
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 117..142
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 288..307
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 314..335
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT CONFLICT 90..91
FT /note="QR -> HK (in Ref. 5; BAA83740 and 4; AAP92748)"
FT /evidence="ECO:0000305"
FT CONFLICT 114
FT /note="E -> Q (in Ref. 5; BAA83740 and 4; AAP92748)"
FT /evidence="ECO:0000305"
FT CONFLICT 133..134
FT /note="QQ -> HH (in Ref. 5; BAA83740 and 4; AAP92748)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 374 AA; 39168 MW; 0BEA92FCB6244C22 CRC64;
MDLKDGGGSE RRGAAAGAGA GAAPLARQGS IYSLTFDEFQ STLGGMGGGL GKDFGSMNMD
ELLRSIWTAE ESQAMASASA AAAAAEGGLQ RQGSLTLPRT LSVKTVDEVW RDLEREASPG
AAAADGGGGG GEQQQPRRQP TLGEMTLEEF LVRAGVVREN TAAAAAMVAA AAAPPVAPRS
IPAVNNSSIF FGNYGGVNDA AAAAAGAMGF SPVGIGDPTM GNRLMSGVAG IGGGAITVAP
VDTSVGQMDS AGKGDGDLSS PMAPVPYPFE GVIRGRRSGG NVEKVVERRQ RRMIKNRESA
ARSRARKQAY TMELEAEVQK LKEQNMELQK KQEEIMEMQK NFFPEMQKNQ VLEAVNNPYG
QKKRCLRRTL TGPW
