TRBP2_XENLA
ID TRBP2_XENLA Reviewed; 351 AA.
AC Q6GPZ1;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 05-MAY-2009, sequence version 2.
DT 03-AUG-2022, entry version 77.
DE RecName: Full=RISC-loading complex subunit tarbp2 {ECO:0000255|HAMAP-Rule:MF_03034};
GN Name=tarbp2;
OS Xenopus laevis (African clawed frog).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus.
OX NCBI_TaxID=8355;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Spleen;
RG NIH - Xenopus Gene Collection (XGC) project;
RL Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Required for formation of the RNA induced silencing complex
CC (RISC). Component of the RISC loading complex (RLC), also known as the
CC micro-RNA (miRNA) loading complex (miRLC), which is composed of dicer1,
CC ago2 and tarbp2. Within the RLC/miRLC, dicer1 and tarbp2 are required
CC to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load
CC them onto ago2. ago2 bound to the mature miRNA constitutes the minimal
CC RISC and may subsequently dissociate from dicer1 and tarbp2. May also
CC play a role in the production of short interfering RNAs (siRNAs) from
CC double-stranded RNA (dsRNA) by dicer1. {ECO:0000255|HAMAP-
CC Rule:MF_03034}.
CC -!- SUBUNIT: Self-associates. Component of the RISC loading complex (RLC),
CC or micro-RNA (miRNA) loading complex (miRLC), which is composed of
CC dicer1, ago2 and tarbp2. Note that the trimeric RLC/miRLC is also
CC referred to as RISC. {ECO:0000255|HAMAP-Rule:MF_03034}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_03034}.
CC -!- SIMILARITY: Belongs to the TARBP2 family. {ECO:0000255|HAMAP-
CC Rule:MF_03034}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAH72963.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; BC072963; AAH72963.1; ALT_INIT; mRNA.
DR RefSeq; NP_001085574.1; NM_001092105.1.
DR AlphaFoldDB; Q6GPZ1; -.
DR SMR; Q6GPZ1; -.
DR DNASU; 444000; -.
DR GeneID; 444000; -.
DR KEGG; xla:444000; -.
DR CTD; 444000; -.
DR Xenbase; XB-GENE-866097; tarbp2.L.
DR OrthoDB; 1093169at2759; -.
DR Proteomes; UP000186698; Chromosome 2L.
DR Bgee; 444000; Expressed in ovary and 20 other tissues.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0016442; C:RISC complex; ISS:UniProtKB.
DR GO; GO:0070578; C:RISC-loading complex; ISS:UniProtKB.
DR GO; GO:0003725; F:double-stranded RNA binding; IEA:InterPro.
DR GO; GO:0035198; F:miRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0070883; F:pre-miRNA binding; IEA:InterPro.
DR GO; GO:0042803; F:protein homodimerization activity; IEA:UniProtKB-UniRule.
DR GO; GO:0035197; F:siRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0031054; P:pre-miRNA processing; IEA:UniProtKB-UniRule.
DR GO; GO:1903798; P:regulation of miRNA maturation; IEA:InterPro.
DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR GO; GO:0046782; P:regulation of viral transcription; IEA:InterPro.
DR GO; GO:0030422; P:siRNA processing; IEA:UniProtKB-UniRule.
DR CDD; cd19890; DSRM_TARBP2_rpt1; 1.
DR CDD; cd10844; DSRM_TARBP2_rpt2; 1.
DR CDD; cd19893; DSRM_TARBP2_rpt3; 1.
DR HAMAP; MF_03034; TRBP2; 1.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR032478; Staufen_C.
DR InterPro; IPR028605; TRBP2.
DR InterPro; IPR044469; TRBP2_DSRM_1.
DR InterPro; IPR044470; TRBP2_DSRM_2.
DR InterPro; IPR044471; TRBP2_DSRM_3.
DR PANTHER; PTHR46205:SF1; PTHR46205:SF1; 1.
DR Pfam; PF00035; dsrm; 2.
DR Pfam; PF16482; Staufen_C; 1.
DR SMART; SM00358; DSRM; 3.
DR PROSITE; PS50137; DS_RBD; 3.
PE 2: Evidence at transcript level;
KW Cytoplasm; Reference proteome; Repeat; RNA-binding;
KW RNA-mediated gene silencing; Translation regulation.
FT CHAIN 1..351
FT /note="RISC-loading complex subunit tarbp2"
FT /id="PRO_0000373974"
FT DOMAIN 29..96
FT /note="DRBM 1"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03034"
FT DOMAIN 150..218
FT /note="DRBM 2"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03034"
FT DOMAIN 278..346
FT /note="DRBM 3"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03034"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 221..243
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 221..240
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 351 AA; 38172 MW; B3DC45024247B6AC CRC64;
MSENGDCEHQ TSSGFPSIEQ MLASSPGKTP ISLLQEYGTR VGKTPVYDLL KAEGQAHQPN
FTFRVSVGDI NCTGQGPSKK AAKHKAAEVA LSLLKEGEMF GVMCEENSVV LSVEQPAELK
EVADVSPPPT TRNHTIEMKP PLSAQQSECN PVGALQELVV QKGWRLPEYT VTQESGPAHR
KEFTMTCRVE RFLEIGSGTS KKLAKRNAAA KMLLQIHQVP AEHRESGETE PEEDQFSVGK
LDGSRSRGTA CTWDSLRNSS GEKILHLRSN PLTILSSGFC SLLQDLSEEQ SFQISYLDID
ERSLSGLCQC LVELSTQPTT VCHGSATTRD AARANAAHNA LQYLKIMAGG K