TRL11_ORYSJ
ID TRL11_ORYSJ Reviewed; 279 AA.
AC Q6Z4N3; A0A0P0XAG7;
DT 15-JUN-2010, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Thioredoxin-like 1-1, chloroplastic;
DE AltName: Full=Lilium-type thioredoxin 1-1;
GN OrderedLocusNames=Os07g0684100, LOC_Os07g48510;
GN ORFNames=OsJ_25618, OSJNBa0060O17.16;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19825616; DOI=10.1093/mp/ssn076;
RA Chibani K., Wingsle G., Jacquot J.P., Gelhaye E., Rouhier N.;
RT "Comparative genomic study of the thioredoxin family in photosynthetic
RT organisms with emphasis on Populus trichocarpa.";
RL Mol. Plant 2:308-322(2009).
CC -!- FUNCTION: Probable thiol-disulfide oxidoreductase that may participate
CC in various redox reactions.
CC -!- SIMILARITY: Belongs to the thioredoxin family. {ECO:0000305}.
CC -!- CAUTION: The active site contains a CGGC motif wich differs from the
CC conserved CGPC motif. {ECO:0000305}.
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DR EMBL; AP005167; BAC83807.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22583.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT03271.1; -; Genomic_DNA.
DR EMBL; CM000144; EAZ41125.1; -; Genomic_DNA.
DR EMBL; AK066094; BAG89817.1; -; mRNA.
DR EMBL; AK104552; BAG96779.1; -; mRNA.
DR EMBL; AK105051; BAG97082.1; -; mRNA.
DR RefSeq; XP_015646723.1; XM_015791237.1.
DR AlphaFoldDB; Q6Z4N3; -.
DR SMR; Q6Z4N3; -.
DR STRING; 4530.OS07T0684100-01; -.
DR PaxDb; Q6Z4N3; -.
DR PRIDE; Q6Z4N3; -.
DR EnsemblPlants; Os07t0684100-01; Os07t0684100-01; Os07g0684100.
DR GeneID; 4344321; -.
DR Gramene; Os07t0684100-01; Os07t0684100-01; Os07g0684100.
DR KEGG; osa:4344321; -.
DR eggNOG; KOG0907; Eukaryota.
DR HOGENOM; CLU_055041_3_1_1; -.
DR InParanoid; Q6Z4N3; -.
DR OMA; ANRDLNF; -.
DR OrthoDB; 1482186at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q6Z4N3; OS.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0045454; P:cell redox homeostasis; IBA:GO_Central.
DR InterPro; IPR036249; Thioredoxin-like_sf.
DR InterPro; IPR013766; Thioredoxin_domain.
DR Pfam; PF00085; Thioredoxin; 1.
DR SUPFAM; SSF52833; SSF52833; 1.
DR PROSITE; PS51352; THIOREDOXIN_2; 1.
PE 2: Evidence at transcript level;
KW Disulfide bond; Electron transport; Redox-active center;
KW Reference proteome; Transport.
FT CHAIN 1..279
FT /note="Thioredoxin-like 1-1, chloroplastic"
FT /id="PRO_0000394837"
FT DOMAIN 56..202
FT /note="Thioredoxin"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00691"
FT ACT_SITE 125
FT /note="Nucleophile"
FT /evidence="ECO:0000255"
FT ACT_SITE 128
FT /note="Nucleophile"
FT /evidence="ECO:0000255"
FT DISULFID 125..128
FT /note="Redox-active"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00691"
SQ SEQUENCE 279 AA; 29769 MW; F52F983F38323E84 CRC64;
MAEALCSGSV ASPCGEVGVG FAAGLVRGAA AAAALAESVP IGGYSSKSTF PSGRVALTER
KARPLPRNLE AAHGQMNLTI GKAMRWWEKC LQPNMREIES AQDLADSLLN AGDKLVVVDF
FSPGCGGCRA LHPKIAQLAE KNPEVLFLQV NYEKHKSMCY SLHVHVLPFF RFYRGAQGRV
SSFSCTNATI KKFKDALAKH GPDRCGLGPA KGLEESELMA LAINRDLNFT YTPNQDLVPI
ADALLKEAAA PGGPWLPLPA TATQLFIQGS ENSLLSSGR
