TRL2_ORYSJ
ID TRL2_ORYSJ Reviewed; 216 AA.
AC Q5TKD8; A0A0N7KKA9; Q0DK29;
DT 15-JUN-2010, integrated into UniProtKB/Swiss-Prot.
DT 21-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Thioredoxin-like 2, chloroplastic;
DE AltName: Full=Lilium-type thioredoxin 2;
DE AltName: Full=OsTrx19;
DE Flags: Precursor;
GN OrderedLocusNames=Os05g0200100, LOC_Os05g11090; ORFNames=OSJNBa0017O06.11;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=19825616; DOI=10.1093/mp/ssn076;
RA Chibani K., Wingsle G., Jacquot J.P., Gelhaye E., Rouhier N.;
RT "Comparative genomic study of the thioredoxin family in photosynthetic
RT organisms with emphasis on Populus trichocarpa.";
RL Mol. Plant 2:308-322(2009).
CC -!- FUNCTION: Probable thiol-disulfide oxidoreductase that may participate
CC in various redox reactions.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the thioredoxin family. {ECO:0000305}.
CC -!- CAUTION: The active site contains a CGSC motif wich differs from the
CC conserved CGPC motif. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF16794.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AC136520; AAV59369.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF16794.2; ALT_INIT; Genomic_DNA.
DR EMBL; AP014961; BAS92705.1; -; Genomic_DNA.
DR EMBL; AK061208; BAG87795.1; -; mRNA.
DR EMBL; AK099199; BAG93992.1; -; mRNA.
DR RefSeq; XP_015637663.1; XM_015782177.1.
DR AlphaFoldDB; Q5TKD8; -.
DR SMR; Q5TKD8; -.
DR STRING; 4530.OS05T0200100-01; -.
DR PaxDb; Q5TKD8; -.
DR PRIDE; Q5TKD8; -.
DR EnsemblPlants; Os05t0200100-01; Os05t0200100-01; Os05g0200100.
DR EnsemblPlants; Os05t0200100-02; Os05t0200100-02; Os05g0200100.
DR GeneID; 4338057; -.
DR Gramene; Os05t0200100-01; Os05t0200100-01; Os05g0200100.
DR Gramene; Os05t0200100-02; Os05t0200100-02; Os05g0200100.
DR KEGG; osa:4338057; -.
DR eggNOG; KOG0907; Eukaryota.
DR HOGENOM; CLU_055041_1_0_1; -.
DR InParanoid; Q5TKD8; -.
DR OMA; KWWERSV; -.
DR OrthoDB; 1482186at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q5TKD8; OS.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0045454; P:cell redox homeostasis; IBA:GO_Central.
DR InterPro; IPR036249; Thioredoxin-like_sf.
DR InterPro; IPR017937; Thioredoxin_CS.
DR InterPro; IPR013766; Thioredoxin_domain.
DR Pfam; PF00085; Thioredoxin; 1.
DR SUPFAM; SSF52833; SSF52833; 1.
DR PROSITE; PS00194; THIOREDOXIN_1; 1.
DR PROSITE; PS51352; THIOREDOXIN_2; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Disulfide bond; Electron transport; Plastid;
KW Redox-active center; Reference proteome; Transit peptide; Transport.
FT TRANSIT 1..58
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 59..216
FT /note="Thioredoxin-like 2, chloroplastic"
FT /id="PRO_0000394839"
FT DOMAIN 61..188
FT /note="Thioredoxin"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00691"
FT REGION 19..70
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..35
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT ACT_SITE 111
FT /note="Nucleophile"
FT /evidence="ECO:0000255"
FT ACT_SITE 114
FT /note="Nucleophile"
FT /evidence="ECO:0000255"
FT DISULFID 111..114
FT /note="Redox-active"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00691"
SQ SEQUENCE 216 AA; 23799 MW; AB281948BC2BC3B7 CRC64;
MAEALLPLPR RLVVTASTPA CSSASSSTSP SPHCLLSRAN PRPPRLAAPS PPRHRRLKAH
AAVSDKSEQP KWWEKNAGPN MIDIHSTQEF LDALRDAGDR LVIVEFYGTW CGSCRALFPR
LCRTAVENPD ILFLKVNFDE NKPMCKRLNV KVLPYFHFYR GADGQLEAFS CSLAKFQKLK
DAIAVHNTAR CSIGPPVGVG DVLDSPEEKP AEASPR
