BXL6_ARATH
ID BXL6_ARATH Reviewed; 792 AA.
AC Q9LXA8; Q8GZ32;
DT 22-SEP-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Probable beta-D-xylosidase 6;
DE Short=AtBXL6;
DE EC=3.2.1.-;
DE Flags: Precursor;
GN Name=BXL6; OrderedLocusNames=At5g10560; ORFNames=F12B17.90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 8-792.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP IDENTIFICATION.
RX PubMed=12609041; DOI=10.1046/j.1365-313x.2003.01654.x;
RA Goujon T., Minic Z., El Amrani A., Lerouxel O., Aletti E., Lapierre C.,
RA Joseleau J.-P., Jouanin L.;
RT "AtBXL1, a novel higher plant (Arabidopsis thaliana) putative beta-
RT xylosidase gene, is involved in secondary cell wall metabolism and plant
RT development.";
RL Plant J. 33:677-690(2003).
CC -!- SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular
CC matrix {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 3 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC41913.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AL353995; CAB89387.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91563.1; -; Genomic_DNA.
DR EMBL; AY057483; AAL09717.1; -; mRNA.
DR EMBL; AK117237; BAC41913.1; ALT_INIT; mRNA.
DR PIR; T49983; T49983.
DR RefSeq; NP_196618.1; NM_121094.3.
DR AlphaFoldDB; Q9LXA8; -.
DR SMR; Q9LXA8; -.
DR STRING; 3702.AT5G10560.1; -.
DR CAZy; GH3; Glycoside Hydrolase Family 3.
DR iPTMnet; Q9LXA8; -.
DR PaxDb; Q9LXA8; -.
DR PRIDE; Q9LXA8; -.
DR ProteomicsDB; 240441; -.
DR EnsemblPlants; AT5G10560.1; AT5G10560.1; AT5G10560.
DR GeneID; 830921; -.
DR Gramene; AT5G10560.1; AT5G10560.1; AT5G10560.
DR KEGG; ath:AT5G10560; -.
DR Araport; AT5G10560; -.
DR TAIR; locus:2142434; AT5G10560.
DR eggNOG; ENOG502QQ55; Eukaryota.
DR HOGENOM; CLU_004542_5_3_1; -.
DR InParanoid; Q9LXA8; -.
DR OMA; GGRPYNL; -.
DR OrthoDB; 321444at2759; -.
DR PhylomeDB; Q9LXA8; -.
DR BioCyc; ARA:AT5G10560-MON; -.
DR PRO; PR:Q9LXA8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LXA8; baseline and differential.
DR Genevisible; Q9LXA8; AT.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0005773; C:vacuole; IDA:TAIR.
DR GO; GO:0046556; F:alpha-L-arabinofuranosidase activity; IBA:GO_Central.
DR GO; GO:0009044; F:xylan 1,4-beta-xylosidase activity; IBA:GO_Central.
DR GO; GO:0031222; P:arabinan catabolic process; IBA:GO_Central.
DR GO; GO:0045493; P:xylan catabolic process; IBA:GO_Central.
DR Gene3D; 2.60.40.10; -; 1.
DR Gene3D; 3.20.20.300; -; 1.
DR Gene3D; 3.40.50.1700; -; 1.
DR InterPro; IPR044993; BXL.
DR InterPro; IPR026891; Fn3-like.
DR InterPro; IPR002772; Glyco_hydro_3_C.
DR InterPro; IPR036881; Glyco_hydro_3_C_sf.
DR InterPro; IPR001764; Glyco_hydro_3_N.
DR InterPro; IPR036962; Glyco_hydro_3_N_sf.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR InterPro; IPR013783; Ig-like_fold.
DR PANTHER; PTHR42721; PTHR42721; 1.
DR Pfam; PF14310; Fn3-like; 1.
DR Pfam; PF00933; Glyco_hydro_3; 1.
DR Pfam; PF01915; Glyco_hydro_3_C; 1.
DR SMART; SM01217; Fn3_like; 1.
DR SUPFAM; SSF51445; SSF51445; 1.
DR SUPFAM; SSF52279; SSF52279; 1.
PE 2: Evidence at transcript level;
KW Extracellular matrix; Glycoprotein; Glycosidase; Hydrolase;
KW Reference proteome; Secreted; Signal.
FT SIGNAL 1..18
FT /evidence="ECO:0000255"
FT CHAIN 19..792
FT /note="Probable beta-D-xylosidase 6"
FT /id="PRO_0000384061"
FT ACT_SITE 309
FT /evidence="ECO:0000250"
FT CARBOHYD 44
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 104
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 124
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 239
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 444
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 618
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 792 AA; 87185 MW; 23E30A899920A473 CRC64;
MNLQLTLISL LFFTSAIAET FKNLDSHPQF PCKPPHFSSY PFCNVSLSIK QRAISLVSLL
MLPEKIGQLS NTAASVPRLG IPPYEWWSES LHGLADNGPG VSFNGSISAA TSFPQVIVSA
ASFNRTLWYE IGSAVAVEGR AMYNGGQAGL TFWAPNINVF RDPRWGRGQE TPGEDPKVVS
EYGVEFVRGF QEKKKRKVLK RRFSDDVDDD RHDDDADGKL MLSACCKHFT AYDLEKWGNF
TRYDFNAVVT EQDMEDTYQP PFETCIRDGK ASCLMCSYNA VNGVPACAQG DLLQKARVEW
GFEGYITSDC DAVATIFAYQ GYTKSPEEAV ADAIKAGVDI NCGTYMLRHT QSAIEQGKVS
EELVDRALLN LFAVQLRLGL FDGDPRRGQY GKLGSNDICS SDHRKLALEA TRQGIVLLKN
DHKLLPLNKN HVSSLAIVGP MANNISNMGG TYTGKPCQRK TLFTELLEYV KKTSYASGCS
DVSCDSDTGF GEAVAIAKGA DFVIVVAGLD LSQETEDKDR VSLSLPGKQK DLVSHVAAVS
KKPVILVLTG GGPVDVTFAK NDPRIGSIIW IGYPGETGGQ ALAEIIFGDF NPGGRLPTTW
YPESFTDVAM SDMHMRANSS RGYPGRTYRF YTGPQVYSFG TGLSYTKFEY KILSAPIRLS
LSELLPQQSS HKKQLQHGEE LRYLQLDDVI VNSCESLRFN VRVHVSNTGE IDGSHVVMLF
SKMPPVLSGV PEKQLIGYDR VHVRSNEMME TVFVIDPCKQ LSVANDVGKR VIPLGSHVLF
LGDLQHSLSV EF
