BZIP4_ARATH
ID BZIP4_ARATH Reviewed; 148 AA.
AC Q9LQ65; A0MED3; G1JSJ2;
DT 15-FEB-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 161.
DE RecName: Full=Basic leucine zipper 4 {ECO:0000303|PubMed:11906833};
DE Short=AtbZIP4 {ECO:0000303|PubMed:11906833};
GN Name=BZIP4 {ECO:0000303|PubMed:11906833};
GN OrderedLocusNames=At1g59530 {ECO:0000312|Araport:AT1G59530};
GN ORFNames=T4M14.10 {ECO:0000312|EMBL:AAK62790.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Wang X., Droege-Laser W.;
RT "AtbZIP4, a transcription factor in Arabidopsis thaliana.";
RL Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Cvi-0;
RX PubMed=21810963; DOI=10.1104/pp.111.181990;
RA Guo Y.-L., Fitz J., Schneeberger K., Ossowski S., Cao J., Weigel D.;
RT "Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-
RT encoding genes in Arabidopsis.";
RL Plant Physiol. 157:757-769(2011).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=11906833; DOI=10.1016/s1360-1385(01)02223-3;
RA Jakoby M., Weisshaar B., Droege-Laser W., Vicente-Carbajosa J.,
RA Tiedemann J., Kroj T., Parcy F.;
RT "bZIP transcription factors in Arabidopsis.";
RL Trends Plant Sci. 7:106-111(2002).
RN [8]
RP FUNCTION.
RX PubMed=26973252; DOI=10.1016/j.jplph.2016.02.012;
RA Nowak K., Gaj M.D.;
RT "Stress-related function of bHLH109 in somatic embryo induction in
RT Arabidopsis.";
RL J. Plant Physiol. 193:119-126(2016).
CC -!- FUNCTION: Probable transcription factor involved in somatic
CC embryogenesis. Acts as positive regulator of BHLH109.
CC {ECO:0000269|PubMed:26973252}.
CC -!- INTERACTION:
CC Q9LQ65; Q8VZI9: At3g11100; NbExp=3; IntAct=EBI-942986, EBI-1998580;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABK28443.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
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DR EMBL; AF400619; AAK94023.1; -; mRNA.
DR EMBL; AC009317; AAF79745.1; -; Genomic_DNA.
DR EMBL; AC027036; AAK62790.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33584.1; -; Genomic_DNA.
DR EMBL; JN389445; AEM36360.1; -; Genomic_DNA.
DR EMBL; DQ446373; ABE65722.1; -; mRNA.
DR EMBL; DQ652903; ABK28443.1; ALT_SEQ; mRNA.
DR EMBL; AB493509; BAH30347.1; -; mRNA.
DR RefSeq; NP_176162.1; NM_104646.2.
DR AlphaFoldDB; Q9LQ65; -.
DR SMR; Q9LQ65; -.
DR IntAct; Q9LQ65; 18.
DR STRING; 3702.AT1G59530.1; -.
DR iPTMnet; Q9LQ65; -.
DR PaxDb; Q9LQ65; -.
DR PRIDE; Q9LQ65; -.
DR EnsemblPlants; AT1G59530.1; AT1G59530.1; AT1G59530.
DR GeneID; 842243; -.
DR Gramene; AT1G59530.1; AT1G59530.1; AT1G59530.
DR KEGG; ath:AT1G59530; -.
DR Araport; AT1G59530; -.
DR TAIR; locus:2202852; AT1G59530.
DR eggNOG; ENOG502S218; Eukaryota.
DR HOGENOM; CLU_148986_0_0_1; -.
DR InParanoid; Q9LQ65; -.
DR OMA; SVCLEIR; -.
DR OrthoDB; 1452234at2759; -.
DR PhylomeDB; Q9LQ65; -.
DR PRO; PR:Q9LQ65; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LQ65; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR046347; bZIP_sf.
DR Pfam; PF00170; bZIP_1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..148
FT /note="Basic leucine zipper 4"
FT /id="PRO_0000438829"
FT DOMAIN 48..97
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 50..72
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 50..70
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 76..90
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT CONFLICT 33
FT /note="D -> E (in Ref. 4; AEM36360)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 148 AA; 17235 MW; 961C61572965DB22 CRC64;
MFYTNMETVH NCFNDATITG DEIIDILAFL QSDESDNPSG INEVVPVDDK KRRRTISNRE
SAKRSRMKKK KRFEELTEEV NRLNIRNQEL KNRLANVVSC GNFISRENNR LKTESVCLEI
RLLELYRFLV AMQSPISTSV NYITTLEI
