TROL_ORYSJ
ID TROL_ORYSJ Reviewed; 478 AA.
AC Q6ETQ7;
DT 22-NOV-2017, integrated into UniProtKB/Swiss-Prot.
DT 16-AUG-2004, sequence version 1.
DT 25-MAY-2022, entry version 114.
DE RecName: Full=Protein THYLAKOID RHODANESE-LIKE, chloroplastic {ECO:0000303|PubMed:26941088};
DE Flags: Precursor;
GN Name=TROL {ECO:0000303|PubMed:26941088};
GN OrderedLocusNames=LOC_Os02g15750 {ECO:0000305},
GN Os02g0257300 {ECO:0000312|EMBL:BAF08387.1};
GN ORFNames=OsJ_06134 {ECO:0000312|EMBL:EAZ22465.1},
GN P0613F08.22 {ECO:0000312|EMBL:BAD27963.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [4]
RP SUBUNIT.
RC STRAIN=cv. Nipponbare;
RX PubMed=26941088; DOI=10.1105/tpc.15.01027;
RA Yang C., Hu H., Ren H., Kong Y., Lin H., Guo J., Wang L., He Y., Ding X.,
RA Grabsztunowicz M., Mulo P., Chen T., Liu Y., Wu Z., Wu Y., Mao C., Wu P.,
RA Mo X.;
RT "LIGHT-INDUCED RICE1 regulates light-dependent attachment of LEAF-TYPE
RT FERREDOXIN-NADP+ OXIDOREDUCTASE to the thylakoid membrane in rice and
RT Arabidopsis.";
RL Plant Cell 28:712-728(2016).
CC -!- FUNCTION: Rhodanese domain-containing protein required for anchoring
CC ferredoxin--NADP reductase to the thylakoid membranes and sustaining
CC efficient linear electron flow (LEF). {ECO:0000250|UniProtKB:Q9M158}.
CC -!- SUBUNIT: Component of high molecular weight thylakoid LFNRs-containing
CC protein complexes containing LIR1, LFNR1, LFNR2, TIC62 and TROL
CC proteins. {ECO:0000269|PubMed:26941088}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000250|UniProtKB:Q9M158}; Multi-pass membrane protein
CC {ECO:0000255}. Note=Mainly localized to the non-appressed regions of
CC the thylakoid membrane. {ECO:0000250|UniProtKB:Q9M158}.
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DR EMBL; AP004801; BAD27963.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08387.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ22465.1; -; Genomic_DNA.
DR RefSeq; XP_015623500.1; XM_015768014.1.
DR AlphaFoldDB; Q6ETQ7; -.
DR SMR; Q6ETQ7; -.
DR STRING; 4530.OS02T0257300-00; -.
DR GeneID; 4328925; -.
DR KEGG; osa:4328925; -.
DR eggNOG; ENOG502QTIH; Eukaryota.
DR HOGENOM; CLU_023830_2_0_1; -.
DR InParanoid; Q6ETQ7; -.
DR OrthoDB; 1204948at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR GO; GO:0098807; C:chloroplast thylakoid membrane protein complex; IDA:UniProtKB.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR Gene3D; 3.40.250.10; -; 1.
DR InterPro; IPR001763; Rhodanese-like_dom.
DR InterPro; IPR036873; Rhodanese-like_dom_sf.
DR InterPro; IPR044240; STR4-like.
DR PANTHER; PTHR47377; PTHR47377; 2.
DR SUPFAM; SSF52821; SSF52821; 1.
DR PROSITE; PS50206; RHODANESE_3; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Membrane; Plastid; Thylakoid; Transit peptide; Transmembrane;
KW Transmembrane helix.
FT TRANSIT 1..21
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT TRANSIT 22..58
FT /note="Thylakoid"
FT /evidence="ECO:0000250|UniProtKB:Q9M158"
FT CHAIN 59..478
FT /note="Protein THYLAKOID RHODANESE-LIKE, chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000442382"
FT TRANSMEM 102..122
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 266..286
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 289..309
FT /note="Helical"
FT /evidence="ECO:0000255"
FT DOMAIN 142..248
FT /note="Rhodanese"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00173"
FT REGION 1..29
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 344..478
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 396..414
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 415..435
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 448..478
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 478 AA; 48403 MW; 365FF278B28D0F85 CRC64;
MAATTTILSS AAPTPLTAPP RARARAPAAR RRRLRARDIL GAALGLANGG ASAALAAPLS
YEETLRLSTD SGGGGGGGGG GEFALPDLGL GGVLDFVAQN PLAAAAGVAA VALPLVLAQV
LGGASKPYGV VSAAAAYRAL VEEPGAQLVD IRPPGDARQS GAPDLREAKK KAAAVPYDGE
DKNGFLKKLS LRFKDPENTT LVILDKFDGN SELVAELVTA NGYKAAFAVK DGAEGRRGWL
SSSLPWTAPK KGFSLSDLIG DGTDGLPVTL GLAAATGLGI LAYTEIETVL QFLGSAAIVQ
LVASKLIYAE DRKRTLKQID DFFNKKVAPK ELVDEIKEIG QALLPSTGTK SQPAITEAAP
ATAEAAPAAA TATAAPPAAP VEETSTEAAP AEPTPLSPYT NYPDLKPPSS PSPLAPAEAT
KNESESESAA TESAPAVNSA PVAEAAPEAA PPAAPRPLSP YPNYPDLKPP SSPSPSAP
