BZP39_ORYSJ
ID BZP39_ORYSJ Reviewed; 646 AA.
AC Q6AU90; Q0DI72;
DT 30-NOV-2016, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 25-MAY-2022, entry version 110.
DE RecName: Full=bZIP transcription factor 39 {ECO:0000303|PubMed:18065552};
DE Short=OsbZIP39 {ECO:0000303|PubMed:18065552};
GN Name=BZIP39 {ECO:0000303|PubMed:18065552};
GN OrderedLocusNames=Os05g0411300 {ECO:0000312|EMBL:BAS94003.1},
GN LOC_Os05g34050 {ECO:0000305};
GN ORFNames=OsJ_18536 {ECO:0000312|EMBL:EEE63718.1},
GN P0668F02.11 {ECO:0000312|EMBL:AAT85257.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18065552; DOI=10.1104/pp.107.112821;
RA Nijhawan A., Jain M., Tyagi A.K., Khurana J.P.;
RT "Genomic survey and gene expression analysis of the basic leucine zipper
RT transcription factor family in rice.";
RL Plant Physiol. 146:333-350(2008).
RN [8]
RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=22084314; DOI=10.1093/pcp/pcr157;
RA Takahashi H., Kawakatsu T., Wakasa Y., Hayashi S., Takaiwa F.;
RT "A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the
RT endoplasmic reticulum stress response.";
RL Plant Cell Physiol. 53:144-153(2012).
RN [9]
RP FUNCTION.
RX PubMed=22050533; DOI=10.1111/j.1365-313x.2011.04844.x;
RA Hayashi S., Wakasa Y., Takahashi H., Kawakatsu T., Takaiwa F.;
RT "Signal transduction by IRE1-mediated splicing of bZIP50 and other stress
RT sensors in the endoplasmic reticulum stress response of rice.";
RL Plant J. 69:946-956(2012).
CC -!- FUNCTION: Transcription factor involved in endoplasmic reticulum (ER)
CC stress response. Acts as ER stress sensor and activates the
CC transcription factor BZIP50 and the chaperone BIP1.
CC {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.
CC -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
CC {ECO:0000269|PubMed:22084314}; Single-pass membrane protein
CC {ECO:0000255}. Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978,
CC ECO:0000269|PubMed:22084314}. Note=The bZIP domain is translocated into
CC the nucleus in response to ER stress. {ECO:0000269|PubMed:22084314}.
CC -!- TISSUE SPECIFICITY: Highly expressed in leaf blade, and at lower levels
CC in roots, leaf sheaths, flowers and seeds.
CC {ECO:0000269|PubMed:22084314}.
CC -!- INDUCTION: Induced by dithiothreitol- and tunicamycin-induced
CC endoplasmic reticulum (ER) stress response.
CC {ECO:0000269|PubMed:22084314}.
CC -!- SIMILARITY: Belongs to the bZIP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF17451.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS94004.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC130729; AAT85257.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF17451.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014961; BAS94003.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS94004.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000142; EEE63718.1; -; Genomic_DNA.
DR EMBL; AK073142; BAG93307.1; -; mRNA.
DR RefSeq; XP_015640085.1; XM_015784599.1.
DR AlphaFoldDB; Q6AU90; -.
DR SMR; Q6AU90; -.
DR STRING; 4530.OS05T0411300-01; -.
DR PaxDb; Q6AU90; -.
DR PRIDE; Q6AU90; -.
DR EnsemblPlants; Os05t0411300-01; Os05t0411300-01; Os05g0411300.
DR GeneID; 4338781; -.
DR Gramene; Os05t0411300-01; Os05t0411300-01; Os05g0411300.
DR KEGG; osa:4338781; -.
DR eggNOG; ENOG502QQUV; Eukaryota.
DR HOGENOM; CLU_018118_2_0_1; -.
DR InParanoid; Q6AU90; -.
DR OMA; FNHNFGM; -.
DR OrthoDB; 849173at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR GO; GO:0005789; C:endoplasmic reticulum membrane; IDA:UniProtKB.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0006990; P:positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response; IBA:GO_Central.
DR GO; GO:0034976; P:response to endoplasmic reticulum stress; IMP:UniProtKB.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR046347; bZIP_sf.
DR Pfam; PF00170; bZIP_1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Endoplasmic reticulum; Glycoprotein; Membrane; Nucleus;
KW Reference proteome; Transcription; Transcription regulation; Transmembrane;
KW Transmembrane helix; Unfolded protein response.
FT CHAIN 1..646
FT /note="bZIP transcription factor 39"
FT /id="PRO_0000438368"
FT TOPO_DOM 1..311
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 312..332
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 333..646
FT /note="Lumenal"
FT /evidence="ECO:0000305"
FT DOMAIN 172..232
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 25..172
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 174..205
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 211..218
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 272..308
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 560..585
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 75..99
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 103..120
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 290..307
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 371
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 399
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 525
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 530
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 565
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 571
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 646 AA; 68810 MW; 23B55EC8DD6D1AF0 CRC64;
MAEPALLDPT AAFDLRLYPA HLFDHELPLA GGGGGDDDDD LPLDGLEFDL PGDFSVEDFL
LRSPERDDSG EGSAAGSGPT ASPSSSPTTS ASNSAVANGS GGEVKHEESD EGRSGGGDPK
WSLKRKQASP GPSSDAAKCR RSGDGDVSPS ASASRTAVDS DEGGTVCEEE EDERRAARLM
RNRESAQLSR QRKKRYVEEL EEKVKSMHSV INDLNSRISF VVAENATLRQ QLSGGSVNCP
PPGVYPPAPI PGMHFPWMPG YAMRPPGSHV PLVPIPRLKP QQPVPSSKVV KKPESKKTVE
NKSKSKTKTK KVASVSLLGL LLIMLVFGAF IPGFNHNFGM CGQSDNAMFR NFGQSHARVL
SVSSQDKSSL NNSDMIGVDV GKMTGNTDGP GKKHQPAHNS SEILPALLYV PRNGKHVKIN
GNLIIHSVLA SEKAVAHKAS KDDSDQSARD HKETSVAIAR YLSLPGKDVN RQETSSADGP
LPQWFREGME GPILNSGMCS EVFQFDISTA SSNPGGIIPA SPVVNSSSVN ATEKIPAHSA
AYHGKLKNRR VMYNEAIPLT GKTANNTEPF NRTSESSSKL PDSKPASSVV VSVLADPREA
GNGDGDPRVS PKPLSKIFVV VLVDGVRYVT YSCTLPFKSS SPHLVN
