TRUD_THEAC
ID TRUD_THEAC Reviewed; 411 AA.
AC Q9HLL3;
DT 26-SEP-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 99.
DE RecName: Full=Probable tRNA pseudouridine synthase D {ECO:0000255|HAMAP-Rule:MF_01082};
DE EC=5.4.99.27 {ECO:0000255|HAMAP-Rule:MF_01082};
DE AltName: Full=tRNA pseudouridine(13) synthase {ECO:0000255|HAMAP-Rule:MF_01082};
DE AltName: Full=tRNA pseudouridylate synthase D {ECO:0000255|HAMAP-Rule:MF_01082};
DE AltName: Full=tRNA-uridine isomerase D {ECO:0000255|HAMAP-Rule:MF_01082};
GN Name=truD {ECO:0000255|HAMAP-Rule:MF_01082}; OrderedLocusNames=Ta0214;
OS Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC
OS 15155 / AMRC-C165).
OC Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Thermoplasmatales;
OC Thermoplasmataceae; Thermoplasma.
OX NCBI_TaxID=273075;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165;
RX PubMed=11029001; DOI=10.1038/35035069;
RA Ruepp A., Graml W., Santos-Martinez M.-L., Koretke K.K., Volker C.,
RA Mewes H.-W., Frishman D., Stocker S., Lupas A.N., Baumeister W.;
RT "The genome sequence of the thermoacidophilic scavenger Thermoplasma
RT acidophilum.";
RL Nature 407:508-513(2000).
CC -!- FUNCTION: Could be responsible for synthesis of pseudouridine from
CC uracil-13 in transfer RNAs. {ECO:0000255|HAMAP-Rule:MF_01082}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=uridine(13) in tRNA = pseudouridine(13) in tRNA;
CC Xref=Rhea:RHEA:42540, Rhea:RHEA-COMP:10105, Rhea:RHEA-COMP:10106,
CC ChEBI:CHEBI:65314, ChEBI:CHEBI:65315; EC=5.4.99.27;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01082};
CC -!- SIMILARITY: Belongs to the pseudouridine synthase TruD family.
CC {ECO:0000255|HAMAP-Rule:MF_01082}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AL445063; CAC11360.1; -; Genomic_DNA.
DR RefSeq; WP_010900641.1; NC_002578.1.
DR AlphaFoldDB; Q9HLL3; -.
DR SMR; Q9HLL3; -.
DR STRING; 273075.Ta0214; -.
DR EnsemblBacteria; CAC11360; CAC11360; CAC11360.
DR GeneID; 1455850; -.
DR KEGG; tac:Ta0214; -.
DR eggNOG; arCOG04252; Archaea.
DR HOGENOM; CLU_005281_4_1_2; -.
DR OMA; GFPNYFD; -.
DR OrthoDB; 92795at2157; -.
DR Proteomes; UP000001024; Chromosome.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0106029; F:tRNA pseudouridine synthase activity; IEA:UniProtKB-EC.
DR GO; GO:0031119; P:tRNA pseudouridine synthesis; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.2350.20; -; 1.
DR HAMAP; MF_01082; TruD; 1.
DR InterPro; IPR020103; PsdUridine_synth_cat_dom_sf.
DR InterPro; IPR001656; PsdUridine_synth_TruD.
DR InterPro; IPR020119; PsdUridine_synth_TruD_CS.
DR InterPro; IPR011760; PsdUridine_synth_TruD_insert.
DR InterPro; IPR042214; TruD_catalytic.
DR PANTHER; PTHR13326; PTHR13326; 1.
DR Pfam; PF01142; TruD; 1.
DR SUPFAM; SSF55120; SSF55120; 1.
DR TIGRFAMs; TIGR00094; tRNA_TruD_broad; 1.
DR PROSITE; PS50984; TRUD; 1.
DR PROSITE; PS01268; UPF0024; 1.
PE 3: Inferred from homology;
KW Isomerase; Reference proteome; tRNA processing.
FT CHAIN 1..411
FT /note="Probable tRNA pseudouridine synthase D"
FT /id="PRO_0000152556"
FT DOMAIN 150..369
FT /note="TRUD"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01082"
FT ACT_SITE 79
FT /note="Nucleophile"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01082"
SQ SEQUENCE 411 AA; 47817 MW; 4A0B3080BA98F1C1 CRC64;
MSSTMSADQS NRARPVIRIK ENPEDFTVEE VADIPKSDNG KYTIIKAEII DWDTNRIVEE
IASALRISRK RISYAGTKDK RARKIQYFCI NAPVDVSVLA FKGFRIIDRF RSDHYLRLGD
LTANHFRIRF QGASDDYIEQ RYEKMMECGG FPNYFGQQRF GSRRRNTHDV GRLIVTGRYE
DAVRLYLYDE RYDIEDYRRE FIETLDYNRA LEKFPRTLRF ERSIIGYYAQ HHTFKGAFDA
LPKNLSIMFV HAYQSYLFNR MLSLRIEKYG LNRAIPGDTA FPVDRYFNPD KSRPVEVNEV
NVDTINQLIE RDRLRVALPI IGSEVGPDQS DFGEIEKKIL EEEHVDRSMF RNSEYPHLSS
TGDRRIVSAK PVDFSVSNSV MDFTLGRGIY ATTLISTFGD LVDFDAESDG F
