C3H10_ARATH
ID C3H10_ARATH Reviewed; 389 AA.
AC Q9C7P1; F4I1J5; Q9C7P0;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 21-MAR-2012, sequence version 2.
DT 25-MAY-2022, entry version 109.
DE RecName: Full=Putative zinc finger CCCH domain-containing protein 10;
DE Short=AtC3H10;
GN OrderedLocusNames=At1g29600/At1g29610; ORFNames=F15D2.17/F15D2.18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG51745.1; Type=Erroneous gene model prediction; Note=Was originally thought to correspond to two different genes At1g29600 and At1g29610.; Evidence={ECO:0000305};
CC Sequence=AAG51747.1; Type=Erroneous gene model prediction; Note=Was originally thought to correspond to two different genes At1g29600 and At1g29610.; Evidence={ECO:0000305};
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DR EMBL; AC068667; AAG51745.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC068667; AAG51747.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR PIR; B86419; B86419.
DR PIR; C86419; C86419.
DR AlphaFoldDB; Q9C7P1; -.
DR STRING; 3702.AT1G29600.1; -.
DR PaxDb; Q9C7P1; -.
DR PRIDE; Q9C7P1; -.
DR Araport; AT1G29600; -.
DR TAIR; locus:2013603; AT1G29600.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_059817_0_0_1; -.
DR InParanoid; Q9C7P1; -.
DR PRO; PR:Q9C7P1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C7P1; baseline and differential.
DR Genevisible; Q9C7P1; AT.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR InterPro; IPR000571; Znf_CCCH.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 4: Predicted;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..389
FT /note="Putative zinc finger CCCH domain-containing protein
FT 10"
FT /id="PRO_0000371969"
FT ZN_FING 131..157
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 158..190
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..110
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 183..296
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 14..51
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 56..81
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 82..110
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 206..286
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 389 AA; 45579 MW; 3F622DD0FDDC84C4 CRC64;
MANVSFTFDS QEQNKELRPS RLVGRSDERN GRRQGTEQKK KEKEDSGFRV SEEGEIPLQQ
GSNTDSYARD DLTQQQRVSD VVMQRRSHET ESRLWQRART QDRRGSESRM MFDGRTQWSH
APVLSSAYPV RPGEDNCLFY MKNHLCEWGS ECCYNHPPLQ EIPCRIGKKL DCKAGACKRG
SNCPFNHPKE RDGDSLPMPQ GRTPDLRRND SGRRYNTESR SWPENKEKEV GQFRDHQDSK
EDAQEVLLQQ RPRDVEMRKR SRSPDFRAKT ETKEHREAEE RSSRESATAT GKVSGKENEL
RPTYVYLLMM PENHNVDVQQ TLQEQRKRNI KKARIEARLK LDQIRPTVVL ENSRATKMMI
EWGFTDFRKL QGSNLGNKKW ICWVRKHCC
