C3H11_ORYSJ
ID C3H11_ORYSJ Reviewed; 366 AA.
AC Q0JHZ2; A0A0P0V9X4; Q5QMG2;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 02-SEP-2008, sequence version 2.
DT 03-AUG-2022, entry version 77.
DE RecName: Full=Zinc finger CCCH domain-containing protein 11;
DE Short=OsC3H11;
GN OrderedLocusNames=Os01g0834700, LOC_Os01g61830;
GN ORFNames=P0460C04.40, P0506B12.7;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AP003271; BAD73384.1; -; Genomic_DNA.
DR EMBL; AP004366; BAD73789.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06636.2; -; Genomic_DNA.
DR EMBL; AP014957; BAS75094.1; -; Genomic_DNA.
DR EMBL; AK106074; BAG97547.1; -; mRNA.
DR RefSeq; XP_015611509.1; XM_015756023.1.
DR AlphaFoldDB; Q0JHZ2; -.
DR STRING; 4530.OS01T0834700-01; -.
DR iPTMnet; Q0JHZ2; -.
DR PaxDb; Q0JHZ2; -.
DR PRIDE; Q0JHZ2; -.
DR EnsemblPlants; Os01t0834700-01; Os01t0834700-01; Os01g0834700.
DR GeneID; 4327416; -.
DR Gramene; Os01t0834700-01; Os01t0834700-01; Os01g0834700.
DR KEGG; osa:4327416; -.
DR eggNOG; KOG1763; Eukaryota.
DR HOGENOM; CLU_042870_0_1_1; -.
DR InParanoid; Q0JHZ2; -.
DR OMA; DGPMEEG; -.
DR OrthoDB; 1358374at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q0JHZ2; baseline and differential.
DR Genevisible; Q0JHZ2; OS.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR InterPro; IPR032378; ZC3H15/TMA46_C.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF16543; DFRP_C; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc;
KW Zinc-finger.
FT CHAIN 1..366
FT /note="Zinc finger CCCH domain-containing protein 11"
FT /id="PRO_0000346808"
FT ZN_FING 90..117
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 160..198
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 43..66
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 293..338
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 54..79
FT /evidence="ECO:0000255"
FT COILED 208..234
FT /evidence="ECO:0000255"
FT COMPBIAS 293..307
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 324..338
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 366 AA; 41646 MW; 419B566E83CE68C5 CRC64;
MPPKKAAPSK ADLAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQAVQPK PDPTKTAAKK
KKEEEKAREK ELNDLFKVAV SQPKVPVGVD PKSIVCEFFK VGQCQKGFKC KFSHDLNVQR
KGEKIDIYTD KRDAETMEDW DQETLEKVVA SKGAEYQQNK PTDIVCKYFL DAVEKKQYGW
FWVCPNGGKD CHYRHALPPG YVLKSQMKAL LEEESEKIAI EDEIEDQRKK VKTTTPMTTD
LFMEWKRKKA EEREAGLAAL RAERAKNDRM SGRELFMADS SVFVDDAEAY DVYERQEESE
ANEEPSNKNQ DEGPSSSTSN GKEVEESDDE DINIDDDLDI DELNELEASL SRTSIQIREP
GEGTSS
