C3H13_ORYSJ
ID C3H13_ORYSJ Reviewed; 426 AA.
AC Q6H7U2; B7EAL5; Q762A9;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 19-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=Zinc finger CCCH domain-containing protein 13;
DE Short=OsC3H13;
DE AltName: Full=BRI1-kinase domain-interacting protein 105;
DE Short=BIP105;
GN OrderedLocusNames=Os02g0161200, LOC_Os02g06584;
GN ORFNames=B1103G11.54, OJ9003_G05.19;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 149-426.
RC STRAIN=cv. Nipponbare;
RA Hirabayashi S., Matsushita Y., Sato M., Oh-i R., Kasahara M., Abe H.,
RA Nyunoya H.;
RT "Two proton pump interactors identified from a direct phosphorylation
RT screening of a rice cDNA library by using a recombinant BRI1 receptor
RT kinase.";
RL Plant Biotechnol. 21:35-45(2004).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AP004126; BAD25207.1; -; Genomic_DNA.
DR EMBL; AP004843; BAD28055.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF07890.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS77111.1; -; Genomic_DNA.
DR EMBL; AK065198; BAG89412.1; -; mRNA.
DR EMBL; AK122103; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AB117992; BAD11333.1; -; mRNA.
DR RefSeq; XP_015624712.1; XM_015769226.1.
DR AlphaFoldDB; Q6H7U2; -.
DR SMR; Q6H7U2; -.
DR STRING; 4530.OS02T0161200-01; -.
DR PaxDb; Q6H7U2; -.
DR PRIDE; Q6H7U2; -.
DR EnsemblPlants; Os02t0161200-01; Os02t0161200-01; Os02g0161200.
DR GeneID; 4328385; -.
DR Gramene; Os02t0161200-01; Os02t0161200-01; Os02g0161200.
DR KEGG; osa:4328385; -.
DR eggNOG; ENOG502QQDM; Eukaryota.
DR HOGENOM; CLU_052898_0_1_1; -.
DR InParanoid; Q6H7U2; -.
DR OMA; MAGNHFS; -.
DR OrthoDB; 765278at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6H7U2; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR045868; Znf_C3H13/40.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR38160; PTHR38160; 2.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Metal-binding; Reference proteome; Zinc;
KW Zinc-finger.
FT CHAIN 1..426
FT /note="Zinc finger CCCH domain-containing protein 13"
FT /id="PRO_0000346809"
FT ZN_FING 10..36
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 34..155
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 253..317
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 390..426
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 144..245
FT /evidence="ECO:0000255"
FT COMPBIAS 49..68
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 82..123
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 132..155
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 262..279
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 285..317
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 300
FT /note="M -> V (in Ref. 4; AK122103)"
FT /evidence="ECO:0000305"
FT CONFLICT 307
FT /note="R -> G (in Ref. 4; AK122103)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 426 AA; 49077 MW; 5EF48EB3000C8F1E CRC64;
MLGPPRRGPA YKTKLCALWQ RGNCNRDTCS FAHGHGDIRR PPSSRGAFTH HPGRRDYRAG
DFRGRIDRRF SPRRRHSPGR ESRGHRPLYD RRPSSRERDS SYSRSPSRKS ERRHEKKTDD
GETNSSRSLS LSDNNDEKKK DKFSSGDEKE DHEKQLKQIR LDMEALRDDK TQMEVILDEK
IDEVRKISSK VNDLEVQLRR EKDECHRMTS KMKKFIKAHA RFLKAQEEVK RSQARFERLG
DLLASDILKR GANEEGSSVN EDLNERSPNT AATKKRSIPY STSEEAKAVK KRRERDSDTM
TRSDKYRSDV TDFDKTSKGT EATKSLYLKK KLWEDEKSKL GANIFTEKVK GSPVRHVLPS
TGMAAHAIDD LNEAIELEDR HESIDALLEN DADDKTRSPA IPLQPPPVVQ NAYEQYEGDD
EEVDVE
