C3H15_ORYSJ
ID C3H15_ORYSJ Reviewed; 326 AA.
AC Q6K4V3; A0A0P0VHY7;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Zinc finger CCCH domain-containing protein 15;
DE Short=OsC3H15;
GN OrderedLocusNames=Os02g0301000, LOC_Os02g19804; ORFNames=OSJNBa0010K08.8-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=AK106298; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
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DR EMBL; AP005532; BAD23334.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08534.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS78250.1; -; Genomic_DNA.
DR EMBL; AK106298; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015622931.1; XM_015767445.1.
DR AlphaFoldDB; Q6K4V3; -.
DR SMR; Q6K4V3; -.
DR STRING; 4530.OS02T0301000-01; -.
DR PaxDb; Q6K4V3; -.
DR PRIDE; Q6K4V3; -.
DR EnsemblPlants; Os02t0301000-01; Os02t0301000-01; Os02g0301000.
DR GeneID; 4329092; -.
DR Gramene; Os02t0301000-01; Os02t0301000-01; Os02g0301000.
DR KEGG; osa:4329092; -.
DR eggNOG; KOG1813; Eukaryota.
DR HOGENOM; CLU_050460_1_2_1; -.
DR InParanoid; Q6K4V3; -.
DR OMA; ICRDSFK; -.
DR OrthoDB; 1420266at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR ExpressionAtlas; Q6K4V3; baseline and differential.
DR Genevisible; Q6K4V3; OS.
DR GO; GO:0005684; C:U2-type spliceosomal complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0044260; P:cellular macromolecule metabolic process; IEA:UniProt.
DR GO; GO:0034247; P:snoRNA splicing; IBA:GO_Central.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR039971; CWC24-like.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR12930; PTHR12930; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00184; RING; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..326
FT /note="Zinc finger CCCH domain-containing protein 15"
FT /id="PRO_0000346811"
FT ZN_FING 187..215
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 265..303
FT /note="RING-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT REGION 1..142
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 61..98
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 99..122
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 126..140
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 43
FT /note="Missing (in Ref. 4; AK106298)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 326 AA; 35778 MW; EAD44248383D2D89 CRC64;
MADGGGGGEA GSGGSAPVCS FVRKPPKNIR KRPTAPAGSD DDDEDGSGAI AAARAKKAPS
STSKLFFSSA DGSSEPRRFQ YESSRTIQAS TDSRATATLE TETEFDRDAR AIRERQLKQA
EESLKKNPSA PASSSGSGSG EVYKGIHGYT DYKAGFRREH TVSSEKAGGS HGPLRASAHI
RLSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQIEKEWEEA EKARKRRIAM
GGDGSDYEAG EEDDDDDEEA LPFACYICRE PFVDPVVTKC KHYFCEHCAL KHHSKNKKCF
VCNKPTLGIF NAAQEIRKKM AQDKKQ
