C3H16_ORYSJ
ID C3H16_ORYSJ Reviewed; 678 AA.
AC Q6YVX9;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 02-SEP-2008, sequence version 2.
DT 25-MAY-2022, entry version 91.
DE RecName: Full=Zinc finger CCCH domain-containing protein 16;
DE Short=OsC3H16;
GN OrderedLocusNames=Os02g0557500, LOC_Os02g35150; ORFNames=OSJNBb0038F20.8;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 268-678.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD16421.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF09053.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP005808; BAD16421.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008208; BAF09053.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014958; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK112106; -; NOT_ANNOTATED_CDS; mRNA.
DR AlphaFoldDB; Q6YVX9; -.
DR SMR; Q6YVX9; -.
DR STRING; 4530.OS02T0557500-01; -.
DR iPTMnet; Q6YVX9; -.
DR PaxDb; Q6YVX9; -.
DR PRIDE; Q6YVX9; -.
DR eggNOG; KOG2202; Eukaryota.
DR HOGENOM; CLU_632178_0_0_1; -.
DR InParanoid; Q6YVX9; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6YVX9; OS.
DR GO; GO:0005681; C:spliceosomal complex; IBA:GO_Central.
DR GO; GO:0089701; C:U2AF complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0030628; F:pre-mRNA 3'-splice site binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR003954; RRM_dom_euk.
DR InterPro; IPR009145; U2AF_small.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR12620; PTHR12620; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 2.
DR PRINTS; PR01848; U2AUXFACTOR.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00361; RRM_1; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; RNA-binding; Zinc;
KW Zinc-finger.
FT CHAIN 1..678
FT /note="Zinc finger CCCH domain-containing protein 16"
FT /id="PRO_0000346812"
FT DOMAIN 195..295
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT ZN_FING 163..191
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 297..327
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..77
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 93..128
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 358..678
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 33..77
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 93..119
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 371..493
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 494..516
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 529..574
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 575..592
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 620..666
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 417
FT /note="S -> C (in Ref. 4; AK112106)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 678 AA; 78052 MW; 315A5D8BB51221CB CRC64;
MSTAAADPAA AADAAVTRKE RRRERKKERR RRARREAAEA ARKAAEALAA DPEEERRLRE
LEEAEADASE RARRAFEDAE RRWLEAAAAR AAEKAAAARE ESTAPEDSSR EYKDDHGNGT
EEDDEWEYVE DGPAEIIWEG NEITVKKKMV KVPKKAKENQ PIQQDKAHCP FHLKTGACRF
GVRCSRVHFY PDKSCTLLMR NMYSGPGLAL EQDEGLECTD EEIEQSYEEF YEDVHTEFLK
FGELVNFKVC RNGSLHLRGN VYVHYKSLDS ALIAYSSMNG RYFAGKQITC EFVAVTRWKV
AICGEYMRSR FKTCSRGIAC NFIHCFRNPG GDYEWADWDN PPPRYWIRKM AALFGPSDDS
IYGKPSDTPH LERSQSSDRR RPRSSDPRYT PSRTRDEDAH KQHSSRDYSH SKHERSSHTE
HRRDRKESSA SDKHRHREIK DKTSKYSSNM ESERESHKYM REEKHRIDHG NGGKGDHGKV
RSRKNRSERQ ESLEPGSSGR SSDFIDQDTT ESPSGSKSTG RHHKKTRRQS LEEHSTRRSS
RHRDMEDDGR GQSVAVKRKD HHDTSDDRWV ATNSDVDSDL ETQYQRSSSE GSKLGMKYHA
RSDSETGYGR SRSGTTKSRR ERKRQSGNGE RSDTLEVTSD SDTRDMSSDA WRSRSRSSDE
NLSTHRSRRK RSRSSHDS
