C3H17_ARATH
ID C3H17_ARATH Reviewed; 669 AA.
AC Q9ZUM0; Q8L5Y1; Q93YT9;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 25-MAY-2022, entry version 117.
DE RecName: Full=Zinc finger CCCH domain-containing protein 17;
DE Short=AtC3H17;
GN OrderedLocusNames=At2g02160; ORFNames=F5O4.7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
CC -!- INTERACTION:
CC Q9ZUM0; O24407: IAA16; NbExp=3; IntAct=EBI-15206592, EBI-632231;
CC Q9ZUM0; O24410: IAA20; NbExp=3; IntAct=EBI-15206592, EBI-632272;
CC Q9ZUM0; Q39140: TGA6; NbExp=3; IntAct=EBI-15206592, EBI-541321;
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DR EMBL; AC005936; AAC97218.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC05554.1; -; Genomic_DNA.
DR EMBL; AY059770; AAL24118.1; -; mRNA.
DR EMBL; AY099878; AAM20729.1; -; mRNA.
DR EMBL; BT000894; AAN41294.1; -; mRNA.
DR PIR; F84433; F84433.
DR RefSeq; NP_027420.1; NM_126276.4.
DR AlphaFoldDB; Q9ZUM0; -.
DR BioGRID; 150; 6.
DR IntAct; Q9ZUM0; 6.
DR STRING; 3702.AT2G02160.1; -.
DR iPTMnet; Q9ZUM0; -.
DR PaxDb; Q9ZUM0; -.
DR PRIDE; Q9ZUM0; -.
DR ProteomicsDB; 239085; -.
DR EnsemblPlants; AT2G02160.1; AT2G02160.1; AT2G02160.
DR GeneID; 814747; -.
DR Gramene; AT2G02160.1; AT2G02160.1; AT2G02160.
DR KEGG; ath:AT2G02160; -.
DR Araport; AT2G02160; -.
DR TAIR; locus:2051683; AT2G02160.
DR eggNOG; KOG4791; Eukaryota.
DR HOGENOM; CLU_025172_0_0_1; -.
DR InParanoid; Q9ZUM0; -.
DR OMA; STDCIYF; -.
DR OrthoDB; 985862at2759; -.
DR PhylomeDB; Q9ZUM0; -.
DR PRO; PR:Q9ZUM0; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZUM0; baseline and differential.
DR Genevisible; Q9ZUM0; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0016973; P:poly(A)+ mRNA export from nucleus; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
DR InterPro; IPR041686; Znf-CCCH_3.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF15663; zf-CCCH_3; 1.
DR SMART; SM00356; ZnF_C3H1; 3.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 3.
PE 1: Evidence at protein level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..669
FT /note="Zinc finger CCCH domain-containing protein 17"
FT /id="PRO_0000371976"
FT ZN_FING 34..58
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 60..86
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 114..141
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 150..175
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 285..306
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 376..589
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 642..669
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 285..299
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 391..408
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 417..466
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 474..521
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 549..581
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 30
FT /note="K -> E (in Ref. 3; AAM20729)"
FT /evidence="ECO:0000305"
FT CONFLICT 458
FT /note="G -> S (in Ref. 3; AAL24118)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 669 AA; 75832 MW; 3E59A581CA57659B CRC64;
MFAPATQPQQ QHEQKKQSET VSSAEEDALK WNTDCVYFLA SPLTCKKGPE CEYRHSEYAR
MNPRDCYYWL NGNCLNPKCG FRHPPLEGLL GNQGGAPAVS VQPIHATAQH PSVAKQPVPC
LFFQKGMCMK GDMCSFLHTP NPAAYKKQHP VEAKPATDPQ CSKKPIENNT EEKKLPDVNL
SKVVKGHTDI SAAPRVASTG LRDSRSVEGY IPNHVGYEPV VQRKGPGFPS FTEGGHSTQL
LQKYGSDDNN SFHNGKDADD VLRESSPGFD VLVDNEAGDS EYYHVEDRYG RRSQERGNSE
YDPDFSAIAD GDKEALREQR FDSYDRREDR GWGHRRVSSE REDRLDRRVY AEDERSENIL
ESDLRYRLAK QRKGNGMRLS VGGHDYAAPD SSMDRGYRES RRDTPRENSI SSSRLQGRIK
LRERSNGEEG HHFDRRSERG RDRSELPSQG RLRDRIKGRL EENHSGNQER GFGAPWARRR
EMEDERKSAP KSSREESKPE PSLGKRKSFE EDHHSHKRSR DSFAAPLPFS EILKRKKAAA
SGGSRNNNKD ETISKEEAGD EIKLITEEKT EVVSEPKAEV EEEGTVMEEE EIVGEEVYEG
NEDEQAYEGD ELNGEYYYEE GYEEEGGEYA YEEGEEVVYA AEEGEEEATE GGEGEGEEDI
EKKTVEMLS
