C3H17_ORYSJ
ID C3H17_ORYSJ Reviewed; 435 AA.
AC Q0DYP5;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 02-SEP-2008, sequence version 2.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Zinc finger CCCH domain-containing protein 17;
DE Short=OsC3H17;
GN OrderedLocusNames=Os02g0677700, LOC_Os02g45480;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q0DYP5-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q0DYP5-2; Sequence=VSP_035017, VSP_035018;
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DR EMBL; AP008208; BAF09643.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80279.1; -; Genomic_DNA.
DR EMBL; AK102324; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015627227.1; XM_015771741.1. [Q0DYP5-1]
DR AlphaFoldDB; Q0DYP5; -.
DR SMR; Q0DYP5; -.
DR STRING; 4530.OS02T0677700-01; -.
DR PaxDb; Q0DYP5; -.
DR PRIDE; Q0DYP5; -.
DR EnsemblPlants; Os02t0677700-01; Os02t0677700-01; Os02g0677700. [Q0DYP5-2]
DR GeneID; 9271844; -.
DR Gramene; Os02t0677700-01; Os02t0677700-01; Os02g0677700. [Q0DYP5-2]
DR KEGG; osa:9271844; -.
DR eggNOG; KOG0274; Eukaryota.
DR InParanoid; Q0DYP5; -.
DR OMA; MNGGNTR; -.
DR OrthoDB; 757685at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q0DYP5; OS.
DR GO; GO:0032040; C:small-subunit processome; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0030515; F:snoRNA binding; IBA:GO_Central.
DR GO; GO:0034511; F:U3 snoRNA binding; IEA:InterPro.
DR GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR Gene3D; 2.130.10.10; -; 2.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR039241; Rrp9-like.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR041367; Znf-CCCH_4.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR19865; PTHR19865; 1.
DR Pfam; PF00400; WD40; 3.
DR Pfam; PF18044; zf-CCCH_4; 1.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 6.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF50978; SSF50978; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 2.
DR PROSITE; PS50082; WD_REPEATS_2; 2.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Reference proteome;
KW Repeat; WD repeat; Zinc; Zinc-finger.
FT CHAIN 1..435
FT /note="Zinc finger CCCH domain-containing protein 17"
FT /id="PRO_0000346813"
FT REPEAT 148..189
FT /note="WD 1"
FT REPEAT 191..225
FT /note="WD 2"
FT REPEAT 227..264
FT /note="WD 3"
FT REPEAT 271..308
FT /note="WD 4"
FT REPEAT 311..348
FT /note="WD 5"
FT REPEAT 355..395
FT /note="WD 6"
FT REPEAT 397..435
FT /note="WD 7"
FT ZN_FING 28..54
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 108..135
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..30
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 58..107
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 338..341
FT /note="WAAT -> SLCP (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_035017"
FT VAR_SEQ 342..435
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_035018"
SQ SEQUENCE 435 AA; 46640 MW; A69F7B0C6908BD22 CRC64;
MDIETDGRFG NKRVHHRLGP ANGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPEATAK
RPSQSGGGGN VWRNPHSGGG GGRGAGGAGG PNKWGRGPGG ADGGPRHKVP DRPCRYFLAG
DCSYGEKCRY PHSYSMSDSI TMLTPLQGHE KVVTGIALPA GSDKLYSGSK DGTVRMWDCQ
TGQCAGVINM GREIGCMISE GPWLFVGIPD AVKVWNMQTQ AEMNLTGPTG QVYALAVGNE
LLFAATQDGR ILAWRFSAAT NGFEPAASLV GHQLAVVSLV VGAMRLYSAS MDKTIRVWDL
ATLQCIQTLS DHTGVVMSVL CWDQFLLSCS LDQTIKVWAA TESGSLEVTY THKEEHGALA
LSGMPDAQSK PVLLCSLNDN TVRLYDLPSF SDRGRIFSKQ EIRAIQVGPS GLFFTGDGTG
ELKVWQWVID GSQTK
