C3H18_ORYSJ
ID C3H18_ORYSJ Reviewed; 504 AA.
AC Q6K687; B7EYF2;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Zinc finger CCCH domain-containing protein 18;
DE Short=OsC3H18;
GN OrderedLocusNames=Os02g0793000, LOC_Os02g55000;
GN ORFNames=OJ1249_F12.27-1, P0700F06.15-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AP004054; BAD19187.1; -; Genomic_DNA.
DR EMBL; AP005115; BAD19655.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF10279.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81329.1; -; Genomic_DNA.
DR EMBL; AK105863; BAG97399.1; -; mRNA.
DR RefSeq; XP_015622844.1; XM_015767358.1.
DR AlphaFoldDB; Q6K687; -.
DR SMR; Q6K687; -.
DR STRING; 4530.OS02T0793000-01; -.
DR PaxDb; Q6K687; -.
DR PRIDE; Q6K687; -.
DR EnsemblPlants; Os02t0793000-01; Os02t0793000-01; Os02g0793000.
DR GeneID; 4330984; -.
DR Gramene; Os02t0793000-01; Os02t0793000-01; Os02g0793000.
DR KEGG; osa:4330984; -.
DR eggNOG; KOG2185; Eukaryota.
DR HOGENOM; CLU_043217_0_0_1; -.
DR InParanoid; Q6K687; -.
DR OMA; QYTRGIG; -.
DR OrthoDB; 1238995at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR ExpressionAtlas; Q6K687; baseline and differential.
DR Genevisible; Q6K687; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR000467; G_patch_dom.
DR InterPro; IPR041367; Znf-CCCH_4.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF01585; G-patch; 1.
DR Pfam; PF18044; zf-CCCH_4; 1.
DR SMART; SM00443; G_patch; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50174; G_PATCH; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Metal-binding; Reference proteome; Zinc;
KW Zinc-finger.
FT CHAIN 1..504
FT /note="Zinc finger CCCH domain-containing protein 18"
FT /id="PRO_0000346814"
FT DOMAIN 304..350
FT /note="G-patch"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00092"
FT ZN_FING 146..173
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 77..105
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 230..276
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 351..390
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 406..432
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 482..504
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 40..69
FT /evidence="ECO:0000255"
FT COILED 430..500
FT /evidence="ECO:0000255"
FT COMPBIAS 244..270
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 372..390
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 409..432
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 504 AA; 55623 MW; EA634FE4A99361F6 CRC64;
MAGEEGEDEA ASIELQLEHH LQEQRASLTA VDEALAADPS NADLLEVHEE LLAAIKDAEE
GLLHLKRSRL VKQIDEIFPN QEPTSEAPEV AVDPPDDVEP EPLEPQEFSV GSKCRFRHKD
GRWYNGCVIG LEGSSDARIS FLTPTSENMS MCKFFLQQRC RFGSNCRLSH GIVIPILSLK
QFTPTRWQQS LVGSSILAAS GHHSGLWRRA ELESWDDDLK VGQVVFQDDG SSARLPSDSL
SISEYADESD EDGEGSSSDE GSDFSEDGDQ EDESVHQGLG LLESKNLSGV QTETAIFAKW
EHHTRGVASK MMAKMGYREG MGLGVSGQGM LDPIPVKVLP PKQSLDHAVA ASEVNDSVGP
GKKRSRGGKR KREKKFAEQA RAAKAEEEER SVFSFINSQL VGQDVAEGSA VKSKKDSSGE
ANGHAKKEDR RSLLAYDDEV KELRSRVEKL EEMMKRNRKD KAFYEAASKK LKQTRKALAD
AEATHASATN AVARKEKEKK WLKF
