C3H20_ARATH
ID C3H20_ARATH Reviewed; 359 AA.
AC O82199;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 25-MAY-2022, entry version 122.
DE RecName: Full=Zinc finger CCCH domain-containing protein 20;
DE Short=AtC3H20;
GN OrderedLocusNames=At2g19810; ORFNames=F6F22.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AC005169; AAC62135.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06929.1; -; Genomic_DNA.
DR EMBL; AY136395; AAM97061.1; -; mRNA.
DR EMBL; BT002114; AAN72125.1; -; mRNA.
DR EMBL; AY084253; AAM60847.1; -; mRNA.
DR PIR; D84581; D84581.
DR RefSeq; NP_179571.1; NM_127539.3.
DR AlphaFoldDB; O82199; -.
DR BioGRID; 1855; 1.
DR STRING; 3702.AT2G19810.1; -.
DR iPTMnet; O82199; -.
DR PaxDb; O82199; -.
DR PRIDE; O82199; -.
DR ProteomicsDB; 240382; -.
DR EnsemblPlants; AT2G19810.1; AT2G19810.1; AT2G19810.
DR GeneID; 816500; -.
DR Gramene; AT2G19810.1; AT2G19810.1; AT2G19810.
DR KEGG; ath:AT2G19810; -.
DR Araport; AT2G19810; -.
DR TAIR; locus:2052005; AT2G19810.
DR eggNOG; KOG1595; Eukaryota.
DR HOGENOM; CLU_044407_0_0_1; -.
DR InParanoid; O82199; -.
DR OMA; KWCEEDE; -.
DR OrthoDB; 1188286at2759; -.
DR PhylomeDB; O82199; -.
DR PRO; PR:O82199; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O82199; baseline and differential.
DR Genevisible; O82199; AT.
DR GO; GO:0005886; C:plasma membrane; IDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0051607; P:defense response to virus; IEP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR GO; GO:0006979; P:response to oxidative stress; IMP:TAIR.
DR InterPro; IPR045234; Unkempt-like.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR14493; PTHR14493; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR PROSITE; PS50103; ZF_C3H1; 3.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..359
FT /note="Zinc finger CCCH domain-containing protein 20"
FT /id="PRO_0000371979"
FT ZN_FING 75..107
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 119..145
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 153..177
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 207..226
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 334..359
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 359 AA; 39845 MW; 6146E41AB6561134 CRC64;
MMIGESHRGF NPTVHIPPWP LSEDLTVSDI YGSPDGGSSM MEALAELQRY LPSNEPDPDS
DPDLSGPDSP IDAYTCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRKFHYS
GTACPEFRKG CCKRGDACEF SHGVFECWLH PARYRTQPCK DGGNCRRRVC FFAHSPDQIR
VLPNQSPDRV DSFDVLSPTI RRAFQFSISP SSNSPPVSPR GDSDSSCSLL SRSLGSNLGN
DVVASLRNLQ LNKVKSSLSS SYNNQIGGYG SGFGSPRGSV LGPGFRSLPT TPTRPGFMNI
WENGLEEEPA MERVESGREL RAQLFEKLSK ENCMGRIEPD PDQGAGDTPD VGWVSDLVM
