C3H20_ORYSJ
ID C3H20_ORYSJ Reviewed; 707 AA.
AC Q0DVU4; A0A0P0VS55;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 67.
DE RecName: Full=Zinc finger CCCH domain-containing protein 20;
DE Short=OsC3H20;
GN OrderedLocusNames=Os03g0112700, LOC_Os03g02160;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AP008209; BAF10644.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS81939.1; -; Genomic_DNA.
DR EMBL; AK112095; -; NOT_ANNOTATED_CDS; mRNA.
DR AlphaFoldDB; Q0DVU4; -.
DR STRING; 4530.OS03T0112700-01; -.
DR PaxDb; Q0DVU4; -.
DR PRIDE; Q0DVU4; -.
DR EnsemblPlants; Os03t0112700-01; Os03t0112700-01; Os03g0112700.
DR Gramene; Os03t0112700-01; Os03t0112700-01; Os03g0112700.
DR eggNOG; KOG1946; Eukaryota.
DR HOGENOM; CLU_390500_0_0_1; -.
DR InParanoid; Q0DVU4; -.
DR OMA; KDIECES; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q0DVU4; baseline and differential.
DR Genevisible; Q0DVU4; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00642; zf-CCCH; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..707
FT /note="Zinc finger CCCH domain-containing protein 20"
FT /id="PRO_0000346816"
FT ZN_FING 682..707
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..290
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 558..605
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 624..647
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 8..59
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 60..74
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 77..99
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 111..132
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 176..191
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 208..223
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 240..290
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 558..599
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 624..638
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 62
FT /note="N -> S (in Ref. 4; AK112095)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 707 AA; 76139 MW; 681A4B88D6083D85 CRC64;
MLSLSERAPI CSPQSAPSAS ASDTCKMEEN MNQQKTLEAD ISNTSVNQSP QSKILPESSP
DNQDAEHEYR SPPPISESKE LSPQSRTTPG SSPDNQDTER EYPSPPPISG SKEISPQSRT
ILESSPDNQD NGHEYPSPPP IPESIELSPH SKALPESSPD NQDIEPECPS PPQIPESKEL
SRQSKILPES SPGNQDIEPE CPSPPQIPES KELSQQSKIL PESSPDNHDI KCEYSSPTPI
PESKELSLQS KILPESSSDN QDIKCEDPSP TPISKSKEVS PQSKILSESY LDNQDVEREC
PSSILITESK ELAVDLPGSI SLAPEKTAST DVGENSSLAF IFPKSTLAGD DALKSVFDMA
KAHLECEDSK VKEELYVEST VVIRDDMVVN PASGVESIDM SENLLESLME QSCGTFYMDG
TTALEGFLSG STKEEPQCSS PIALSTCSSP IALSPWGEHG YYQGDSVGSS LWGVQDDDPI
GNIWPLSSQA PALQYSSGST AHFIDEATVT HGNNGVVLSS TPGEEVGLPN SGVCTDWGLV
EQVNPETNDA SVSMIDKNSG LVDSQPSAND GSDVGTARNT NHNTNLSLNH ETAVPLSRSS
GEASRKHGFI TDLNVATSEE ALGNTKNWNP YAGNANRGSQ RNHHRDRYSQ ISESWLLSSN
YSRSRSDGFG TGGSSRSTPR GQTQRGICKF HENGYCRKGA SCNYLHP
