C3H21_ARATH
ID C3H21_ARATH Reviewed; 371 AA.
AC Q9SK74;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 110.
DE RecName: Full=Zinc finger CCCH domain-containing protein 21;
DE Short=AtC3H21;
GN OrderedLocusNames=At2g20280; ORFNames=F11A3.17;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AC006569; AAD21760.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC06989.1; -; Genomic_DNA.
DR PIR; C84587; C84587.
DR RefSeq; NP_179618.1; NM_127587.3.
DR AlphaFoldDB; Q9SK74; -.
DR BioGRID; 1900; 1.
DR STRING; 3702.AT2G20280.1; -.
DR iPTMnet; Q9SK74; -.
DR PaxDb; Q9SK74; -.
DR PRIDE; Q9SK74; -.
DR ProteomicsDB; 222823; -.
DR EnsemblPlants; AT2G20280.1; AT2G20280.1; AT2G20280.
DR GeneID; 816547; -.
DR Gramene; AT2G20280.1; AT2G20280.1; AT2G20280.
DR KEGG; ath:AT2G20280; -.
DR Araport; AT2G20280; -.
DR TAIR; locus:2039022; AT2G20280.
DR eggNOG; KOG1763; Eukaryota.
DR HOGENOM; CLU_042870_0_1_1; -.
DR InParanoid; Q9SK74; -.
DR OMA; LWQCPNG; -.
DR OrthoDB; 1358374at2759; -.
DR PhylomeDB; Q9SK74; -.
DR PRO; PR:Q9SK74; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SK74; baseline and differential.
DR Genevisible; Q9SK74; AT.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; HDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR InterPro; IPR032378; ZC3H15/TMA46_C.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF16543; DFRP_C; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 4: Predicted;
KW Coiled coil; DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc;
KW Zinc-finger.
FT CHAIN 1..371
FT /note="Zinc finger CCCH domain-containing protein 21"
FT /id="PRO_0000371980"
FT ZN_FING 88..115
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 159..197
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..64
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 290..371
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 205..237
FT /evidence="ECO:0000255"
FT COILED 283..317
FT /evidence="ECO:0000255"
FT COMPBIAS 9..27
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 28..47
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 298..316
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 327..349
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 354..371
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 371 AA; 42389 MW; 316ABBC3533DFE7B CRC64;
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ATKAAAKKKK
EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG
EKIDIYSDTR DEDGDMDEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF
WSCPNGGKEC HYRHALPPGY VLKSQMKALL EEESSKKLAV EDEIENERAK LQTATQMTPA
LFMEWKRKKI AERDAGLAAS QAERAKNDRM SGRELFLSNA SLFVDDAEAC EEYEREREQE
ETEQKAKNKE AEAGTSKSSG DAEQSSKEVN EEEEDDDDDD DDLDMDELDE LEASLSKTSI
QIREPNDEGS S