C3H22_ARATH
ID C3H22_ARATH Reviewed; 497 AA.
AC Q9SK49;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Zinc finger CCCH domain-containing protein 22;
DE Short=AtC3H22;
GN OrderedLocusNames=At2g24830; ORFNames=F27C12.25;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AC006585; AAD23029.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC07633.1; -; Genomic_DNA.
DR EMBL; AK229189; BAF01059.1; -; mRNA.
DR PIR; A84641; A84641.
DR RefSeq; NP_180056.1; NM_128042.4.
DR AlphaFoldDB; Q9SK49; -.
DR SMR; Q9SK49; -.
DR STRING; 3702.AT2G24830.1; -.
DR PaxDb; Q9SK49; -.
DR PRIDE; Q9SK49; -.
DR ProteomicsDB; 240557; -.
DR EnsemblPlants; AT2G24830.1; AT2G24830.1; AT2G24830.
DR GeneID; 817020; -.
DR Gramene; AT2G24830.1; AT2G24830.1; AT2G24830.
DR KEGG; ath:AT2G24830; -.
DR Araport; AT2G24830; -.
DR TAIR; locus:2047319; AT2G24830.
DR eggNOG; KOG2185; Eukaryota.
DR HOGENOM; CLU_043217_0_0_1; -.
DR InParanoid; Q9SK49; -.
DR OMA; QYTRGIG; -.
DR OrthoDB; 1238995at2759; -.
DR PhylomeDB; Q9SK49; -.
DR PRO; PR:Q9SK49; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9SK49; baseline and differential.
DR Genevisible; Q9SK49; AT.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR000467; G_patch_dom.
DR InterPro; IPR041367; Znf-CCCH_4.
DR InterPro; IPR000571; Znf_CCCH.
DR Pfam; PF01585; G-patch; 1.
DR Pfam; PF18044; zf-CCCH_4; 1.
DR SMART; SM00443; G_patch; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR PROSITE; PS50174; G_PATCH; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..497
FT /note="Zinc finger CCCH domain-containing protein 22"
FT /id="PRO_0000371981"
FT DOMAIN 300..346
FT /note="G-patch"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00092"
FT ZN_FING 136..163
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 236..281
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 352..387
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 238..264
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 265..281
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 360..375
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 497 AA; 55935 MW; 909D7EF7E6A2D59F CRC64;
MASEENNDLE NLLDIQLIEQ KESLSSIDEA LLSDPSNPEL LSVHEELLSA IKEVEEGLLH
LKRARLLEEA DIVLNGLNHD AGVKPEHLEP EKTEEKKDLD GSKCRFRHTD GRWYNGRIIG
FEGSDSAKIS FLTPTSESMM ICKFFMQQRC RFGSSCRSSH GLDVPISSLK NYEQTEWKQL
MVGSKIWAVS GSKYDIWRKA ELESWDDELQ VGGVVFRDDK SSAKLGSDSL ALSEYAQMTD
DDGEEEEEED EQQSASDSED SVSSDYDEGS PQGIGFLEST NLPRGVQTDT ALFAKWENHT
RGIASKMMAS MGYREGMGLG VSGQGILNPI LVKVLPAKRS LDYALEHIRN GECKSEKQKK
KRSRGGKRKR GKKFAEAAKA AKQEEESKPD LFSLINEQIF PTRHEKVHSE SVKNRQNKGP
VDRKALVEYQ DEVRDLKLEM LKLEQMVNRN KKDLVVSEAA TRRLKEVRKA LASTLACQAA
ASNAIVSKEN EKKWLKF
