C3H22_ORYSJ
ID C3H22_ORYSJ Reviewed; 688 AA.
AC Q10M00; A0A0P0VX38; Q10M01;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 02-SEP-2008, sequence version 2.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Zinc finger CCCH domain-containing protein 22;
DE Short=OsC3H22;
GN OrderedLocusNames=Os03g0328900, LOC_Os03g21140;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q10M00-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q10M00-2; Sequence=VSP_035019;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing acceptor splice
CC site. {ECO:0000305}.
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DR EMBL; DP000009; ABF95737.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF95738.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11916.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84014.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84015.1; -; Genomic_DNA.
DR EMBL; AK102616; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK288601; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015632783.1; XM_015777297.1. [Q10M00-1]
DR RefSeq; XP_015632785.1; XM_015777299.1. [Q10M00-2]
DR AlphaFoldDB; Q10M00; -.
DR SMR; Q10M00; -.
DR STRING; 4530.OS03T0328900-01; -.
DR PaxDb; Q10M00; -.
DR PRIDE; Q10M00; -.
DR EnsemblPlants; Os03t0328900-01; Os03t0328900-01; Os03g0328900. [Q10M00-1]
DR EnsemblPlants; Os03t0328900-02; Os03t0328900-02; Os03g0328900. [Q10M00-2]
DR GeneID; 4332722; -.
DR Gramene; Os03t0328900-01; Os03t0328900-01; Os03g0328900. [Q10M00-1]
DR Gramene; Os03t0328900-02; Os03t0328900-02; Os03g0328900. [Q10M00-2]
DR KEGG; osa:4332722; -.
DR eggNOG; ENOG502QWIK; Eukaryota.
DR InParanoid; Q10M00; -.
DR OMA; GGMFPYG; -.
DR OrthoDB; 394732at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q10M00; baseline and differential.
DR Genevisible; Q10M00; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR CDD; cd12458; RRM_AtC3H46_like; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR034365; AtC3H46-like_RRM.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Coiled coil; DNA-binding; Metal-binding;
KW Reference proteome; RNA-binding; Zinc; Zinc-finger.
FT CHAIN 1..688
FT /note="Zinc finger CCCH domain-containing protein 22"
FT /id="PRO_0000346818"
FT DOMAIN 366..442
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT ZN_FING 233..260
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 62..123
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 552..624
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 487..522
FT /evidence="ECO:0000255"
FT COMPBIAS 62..76
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 77..121
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 594..624
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 677
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_035019"
SQ SEQUENCE 688 AA; 73136 MW; F474538C7354C98E CRC64;
MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGDKEMI RLAFGPEALL HSVMAQARKE
LALLPPPPPP SSSSPTVPAA HSPFLLSRQN SGRGPAPSPS PLSASSPSSW AQAQPFSRSN
GSVDEVVGAG EELISPANSG GGAAANAPPF FPRGGDVLLD DFQLQEQLAF LNEGGVNPSH
PLQGFDGAEC RSPGPGEGGG MFPYGLGWAN GGPGHRRSAS VNELCLGGGS SDGFGWKPCL
YYARGFCKNG SSCRFVHGDD AAALTGAAMD AATAEQQQCQ DFLLRSKSQR LGPAAFPYSP
TGSLPGSPSA ATKCLSLLLQ QQHNDNQRAA AAAALMLGGS DEAHKFMGRP RLDRVDFASM
MNPGSRQIYL TFPADSTFRE EDVSNYFSIY GPVHDVRIPY QQKRMFGFVT FVYPETVKLI
LAKGNPHFIC DARVLVKPYK EKGKVPDKYR KHQGDFSGCT TPTGLDGRDP FDLHQLGARM
LQHSNSTNEM MLRRKLEEQQ QAAELQQAIE LHSRRLMDLQ LLDLKNRAAA AVTTAMAMTI
PTANAFGSSQ PLATTMVESP PDSGEQLKGT GYFTEERKMV NGGGDKEESA GEASLNADSD
QSLEHNLPDS PFASPTKSSV SAHQSFTTTD TGVVATSSCS ASHVGISAGT NAGGGINHLR
PSTLDIPSPR DFFSVSSRLA SDHGAIGM
