ID   C3H23_ORYSJ             Reviewed;         677 AA.
AC   Q10LZ9; F4MFP3;
DT   02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT   22-AUG-2006, sequence version 1.
DT   03-AUG-2022, entry version 91.
DE   RecName: Full=Zinc finger CCCH domain-containing protein 23;
DE            Short=OsC3H23;
GN   OrderedLocusNames=Os03g0329200, LOC_Os03g21160;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16109971; DOI=10.1101/gr.3869505;
RG   The rice chromosome 3 sequencing consortium;
RA   Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA   Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA   Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA   Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA   Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA   Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA   Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA   Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA   Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA   Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA   O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA   Jin W., Lee H.R., Jiang J., Jackson S.;
RT   "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT   and diverged grass species.";
RL   Genome Res. 15:1284-1291(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [6]
RP   NOMENCLATURE.
RX   PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA   Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT   "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL   BMC Genomics 9:44-44(2008).
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AK102918; Type=Frameshift; Evidence={ECO:0000305};
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DR   EMBL; DP000009; ABF95739.1; -; Genomic_DNA.
DR   EMBL; DP000009; ABF95740.1; -; Genomic_DNA.
DR   EMBL; AP008209; BAF11917.1; -; Genomic_DNA.
DR   EMBL; AP014959; BAS84016.1; -; Genomic_DNA.
DR   EMBL; AK102918; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015632786.1; XM_015777300.1.
DR   RefSeq; XP_015632787.1; XM_015777301.1.
DR   AlphaFoldDB; Q10LZ9; -.
DR   SMR; Q10LZ9; -.
DR   STRING; 4530.OS03T0329200-01; -.
DR   PaxDb; Q10LZ9; -.
DR   PRIDE; Q10LZ9; -.
DR   EnsemblPlants; Os03t0329200-01; Os03t0329200-01; Os03g0329200.
DR   GeneID; 4332723; -.
DR   Gramene; Os03t0329200-01; Os03t0329200-01; Os03g0329200.
DR   KEGG; osa:4332723; -.
DR   eggNOG; ENOG502QWIK; Eukaryota.
DR   HOGENOM; CLU_028778_0_0_1; -.
DR   InParanoid; Q10LZ9; -.
DR   OMA; SPRTCFF; -.
DR   Proteomes; UP000000763; Chromosome 3.
DR   Proteomes; UP000059680; Chromosome 3.
DR   ExpressionAtlas; Q10LZ9; baseline and differential.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   CDD; cd12458; RRM_AtC3H46_like; 1.
DR   Gene3D; 3.30.70.330; -; 1.
DR   InterPro; IPR034365; AtC3H46-like_RRM.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR000571; Znf_CCCH.
DR   Pfam; PF00076; RRM_1; 1.
DR   Pfam; PF00642; zf-CCCH; 1.
DR   SMART; SM00360; RRM; 1.
DR   SMART; SM00356; ZnF_C3H1; 1.
DR   SUPFAM; SSF54928; SSF54928; 1.
DR   PROSITE; PS50102; RRM; 1.
DR   PROSITE; PS50103; ZF_C3H1; 1.
PE   2: Evidence at transcript level;
KW   Coiled coil; DNA-binding; Metal-binding; Reference proteome; RNA-binding;
KW   Zinc; Zinc-finger.
FT   CHAIN           1..677
FT                   /note="Zinc finger CCCH domain-containing protein 23"
FT                   /id="PRO_0000346819"
FT   DOMAIN          359..435
FT                   /note="RRM"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT   ZN_FING         228..255
FT                   /note="C3H1-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT   REGION          66..117
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          535..607
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          480..513
FT                   /evidence="ECO:0000255"
FT   COMPBIAS        73..115
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        535..566
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        586..607
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        193
FT                   /note="P -> T (in Ref. 5; AK102918)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   677 AA;  71951 MW;  16170D0FB1465E02 CRC64;
     MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGDKEMI RLAFGPEALL HSVMAQARKE
     LALLPPPQAA SSSPTVPAAH SPFLLSRQNS GRCPAPSPSS WAQAQPFSRS NSMGNGGAAD
     EMVGAGEELM SPLNGGGGAA ANAPPFFPRG GDALLDDFEL QEQLAFLHDG AGGVNPGHAL
     QAFDGAECRS PGPGESGGML PYGLAWANGG PGHRRSASVN ELCLGGDGFG WKPCLYYARG
     FCKNGSTCRF VHGGLSDDAA MDATTAEQQQ CQDFLLRSKS QRLGPAAFPF TPTGSLPASP
     SATSKCLSLL LQQQQQHNDN QRAAAAALML AGGDEAHKFM GRPRLDRVDF ASMMNPGSRQ
     IYLTFPADST FREEDVSNYF SIYGPVHDVR IPYQQKRMFG FVTFVYPETV KLILAKGNPH
     FICDARVLVK PYKEKGKVPD KYRKQQQGDF CCMSPTGLDA RDPFDFHQLG ARMLQHSNSA
     NELMLRRKLE EQQQAAELQQ AIDLHSRRLI GLQLLDLKSS AAVHAAETTT MSLPTPITNA
     FTSGQPGATT IVESPPSSTG QLMASCGSPS EGKVVNGGNK ADSAGEVTRN ADSDQSGEHN
     LPDSPFASST KSTAFFTATA ATAIGSEGDF TTGSSCNIGG SAVGSANPLR PPTLDIPSPR
     TCFFPMPRLS EHGAIGM