C3H24_ORYSJ
ID C3H24_ORYSJ Reviewed; 764 AA.
AC Q10EL1; B7F656; Q851S4;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 86.
DE RecName: Full=Zinc finger CCCH domain-containing protein 24;
DE Short=OsC3H24;
GN OrderedLocusNames=Os03g0698800, LOC_Os03g49170; ORFNames=OSJNBb0017F17.19;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=AAO38462.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC097368; AAO38462.1; ALT_INIT; Genomic_DNA.
DR EMBL; DP000009; ABF98372.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12896.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS85899.1; -; Genomic_DNA.
DR EMBL; AK120638; BAH00104.1; -; mRNA.
DR RefSeq; XP_015632054.1; XM_015776568.1.
DR AlphaFoldDB; Q10EL1; -.
DR SMR; Q10EL1; -.
DR STRING; 4530.OS03T0698800-01; -.
DR PaxDb; Q10EL1; -.
DR PRIDE; Q10EL1; -.
DR EnsemblPlants; Os03t0698800-01; Os03t0698800-01; Os03g0698800.
DR GeneID; 4333810; -.
DR Gramene; Os03t0698800-01; Os03t0698800-01; Os03g0698800.
DR KEGG; osa:4333810; -.
DR eggNOG; KOG1595; Eukaryota.
DR HOGENOM; CLU_015068_1_0_1; -.
DR InParanoid; Q10EL1; -.
DR OMA; FAAAMSM; -.
DR OrthoDB; 372844at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q10EL1; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0060255; P:regulation of macromolecule metabolic process; IEA:UniProt.
DR GO; GO:0051171; P:regulation of nitrogen compound metabolic process; IEA:UniProt.
DR GO; GO:0080090; P:regulation of primary metabolic process; IEA:UniProt.
DR Gene3D; 1.25.40.20; -; 1.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR045234; Unkempt-like.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR14493; PTHR14493; 1.
DR Pfam; PF12796; Ank_2; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR PRINTS; PR01415; ANKYRIN.
DR SMART; SM00248; ANK; 2.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF48403; SSF48403; 1.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
DR PROSITE; PS50088; ANK_REPEAT; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW ANK repeat; DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc;
KW Zinc-finger.
FT CHAIN 1..764
FT /note="Zinc finger CCCH domain-containing protein 24"
FT /id="PRO_0000346820"
FT REPEAT 108..138
FT /note="ANK 1"
FT REPEAT 143..175
FT /note="ANK 2"
FT ZN_FING 321..348
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 616..665
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 698..732
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 616..630
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 642..659
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 701..731
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 764 AA; 81044 MW; 1A011C291A4512FD CRC64;
MFLLMASVLP IRQAPMNGTP ISASAAAGVD GVGAAVALAA ATKKSAAAAA AVAEMAKTLT
VDTDDAFAGL LELAADDDAE GLRRALERAP PAAADEAGLW YGRRKVLEHR TPLMVAATYG
SLAVLRLLLS LPSVDVNRRC GSDGTTALHC AASGGSPSCV EAVKLLLAAG ADADATDASG
YRPADVISVP PKMFDAKIAL QDLLGCPKAG HGVLRVVTRA ANSMLSPVSS PTAEDARSPS
AAVMMTTKFA DLPRVVTSEK KEYPVDPSLP DIKNSIYASD EFRMYSFKIR PCSRAYSHDW
TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGVCRRGDM CEYAHGVFEC WLHPAQYRTR
LCKDGTSCNR RVCFFAHTTD ELRPLYVSTG SAVPSPRASA TATMEMAAAM GLMPGSPSSV
SAVMSPFTPP MSPSGNGMPP SLGWQQPNVP TLHLPGSSLQ SSRLRTSLSA RDMPADDYSL
MQDIDSQLIN DLCYSRIGSS TGNHTSRTKS LNPSNLDDLF SAEMVSSPRY SNADQGGMFS
PSHKAAFLNQ FQQQQQALLS PINTVFSPKS VDNQQLPSHS SLLQASLGIS SPGRMSPRCV
ESGSPMNSHL AAALAQREKQ QQTMRSLSSR DLGPSAARAS GVVGSPLSSS WSKWGSPSGT
PDWGVNGEEL GKLRRSSSFE LRSGGDDPDL SWVHTLVKES PPEKQVTTAE SINSVGPSPL
MPPSVSNGEG PSLNAPLDGH DQAAVIGALL EQMQLDQHIG SLAT
