C3H27_ORYSJ
ID C3H27_ORYSJ Reviewed; 903 AA.
AC Q0JDM0; B7F489; Q7XVM3;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 02-SEP-2008, sequence version 2.
DT 03-AUG-2022, entry version 85.
DE RecName: Full=Zinc finger CCCH domain-containing protein 27;
DE Short=OsC3H27;
GN OrderedLocusNames=Os04g0394300, LOC_Os04g32340; ORFNames=OSJNBa0072K14.6;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF14567.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAD40551.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL606621; CAD40551.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008210; BAF14567.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP014960; BAS88993.1; -; Genomic_DNA.
DR EMBL; AK111819; BAG99436.1; -; mRNA.
DR RefSeq; XP_015636478.1; XM_015780992.1.
DR AlphaFoldDB; Q0JDM0; -.
DR SMR; Q0JDM0; -.
DR STRING; 4530.OS04T0394300-01; -.
DR PaxDb; Q0JDM0; -.
DR PRIDE; Q0JDM0; -.
DR EnsemblPlants; Os04t0394300-01; Os04t0394300-01; Os04g0394300.
DR GeneID; 4335690; -.
DR Gramene; Os04t0394300-01; Os04t0394300-01; Os04g0394300.
DR KEGG; osa:4335690; -.
DR eggNOG; KOG2135; Eukaryota.
DR HOGENOM; CLU_011820_0_0_1; -.
DR InParanoid; Q0JDM0; -.
DR OMA; CPMEHGL; -.
DR OrthoDB; 241680at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q0JDM0; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR045137; RBM26/27.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR14398; PTHR14398; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF54928; SSF54928; 2.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Metal-binding; Reference proteome; RNA-binding;
KW Zinc; Zinc-finger.
FT CHAIN 1..903
FT /note="Zinc finger CCCH domain-containing protein 27"
FT /id="PRO_0000346822"
FT DOMAIN 459..531
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT ZN_FING 225..253
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..144
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 390..456
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 545..609
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 642..720
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 826..903
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 608..649
FT /evidence="ECO:0000255"
FT COMPBIAS 44..62
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 70..100
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 397..417
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 427..456
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 549..586
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 667..720
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 903 AA; 97244 MW; 2CE486A83E318401 CRC64;
MIKESSSPAL DADKIEVPSP KDENNSSNSE AATDNEDFEI SDDDDDDRNH KHRKREARPQ
SFDENTEQSP GGPLKKRHKI SGGADSHGEA QKDFFPKFKR RPGAGAHSRA PRVNPSFRDS
SASVAARAPM TRGRGRNGAP WAQHEPRFNT LEMIDFASQM ASQGPPTHPS LFMGPALPSG
GSAQNGSWGP YGFMPGMPNG MLDPIHPLGM QGPIQPAISP LIDLGMPRQR CRDFEERGFC
LRGDMCPMEH GLNRIVVEDM QSLSQFNLPV TVPNTQGLGI QNEPGTAPVN TSSLGGSKGV
PAKDIKSAVT NDVLKLNGTT ALAVSDADVY DPDQPLWNNE HPDASAGFAH TDGVWNAESL
GYEAAREQGN QVLAADSSQN SKSSVWGRIA SKKLGHGKTA NATSTSATGN KRNESYDEMA
PSTVHVNPAS AKDSNGQSNS RIFGDVGRQS NRASHKASRT LYVNGIPLES NRWEALLSHF
QKFGQVIDIY IPSNSEKAFV QFSKREEAEA ALKAPDAVMG NRFIKLWWAN RDRIPDEVEG
RIPAKSSHMS AALANSVPQP SSSNRGKENL QSATPRASSG SSAEASGPGT GHKMLPANSV
KSLPPDTKRQ ESLELLEELR KKQEILAQKR DEFRRQLEKL AKQKGLANSA KQAEAGGKEV
ASNDVHRVTD SKSMNTGTEG PRDAAGTLQN RTSGELASSS HKSSATSAQK PAVATKQTSP
LLVPSQNRFK LDNRTTSFRI LPPLPPEIAD ESVLKDHFMS FGELSSVVLE DTEAYNHDAT
LKPSLSCSAC VTYTTRQSAE KAFIGGKSCK GHTLRFMWLT ASPGSTNHSR FQKTSIPARA
SSFSSQTQNM PSESSTTVGK MSSTVKSSTT AKPHSESMPT ATSAKTSVEI PKALSSRDSD
VSQ
