C3H28_ARATH
ID C3H28_ARATH Reviewed; 252 AA.
AC Q5PP65; O82297;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 04-JAN-2005, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Zinc finger CCCH domain-containing protein 28;
DE Short=AtC3H28;
GN OrderedLocusNames=At2g35430; ORFNames=T32F12.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JAN-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- INTERACTION:
CC Q5PP65; Q9LFC0: HAKAI; NbExp=3; IntAct=EBI-15192363, EBI-15192365;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC36178.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC005314; AAC36178.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC09108.1; -; Genomic_DNA.
DR EMBL; BT020232; AAV74226.1; -; mRNA.
DR EMBL; BT020553; AAW70399.1; -; mRNA.
DR PIR; E84768; E84768.
DR RefSeq; NP_181086.2; NM_129095.4.
DR AlphaFoldDB; Q5PP65; -.
DR BioGRID; 3455; 13.
DR IntAct; Q5PP65; 13.
DR STRING; 3702.AT2G35430.1; -.
DR iPTMnet; Q5PP65; -.
DR PaxDb; Q5PP65; -.
DR PRIDE; Q5PP65; -.
DR ProteomicsDB; 239109; -.
DR EnsemblPlants; AT2G35430.1; AT2G35430.1; AT2G35430.
DR GeneID; 818109; -.
DR Gramene; AT2G35430.1; AT2G35430.1; AT2G35430.
DR KEGG; ath:AT2G35430; -.
DR Araport; AT2G35430; -.
DR TAIR; locus:2062476; AT2G35430.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_060653_1_0_1; -.
DR InParanoid; Q5PP65; -.
DR OMA; DDTESPC; -.
DR OrthoDB; 759672at2759; -.
DR PhylomeDB; Q5PP65; -.
DR PRO; PR:Q5PP65; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q5PP65; baseline and differential.
DR Genevisible; Q5PP65; AT.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR045877; ZFP36-like.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR12547; PTHR12547; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF90229; SSF90229; 2.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 1: Evidence at protein level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..252
FT /note="Zinc finger CCCH domain-containing protein 28"
FT /id="PRO_0000371986"
FT ZN_FING 71..99
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 143..171
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 252 AA; 27736 MW; D8A8F4BF4F8BAB31 CRC64;
MSHRRDYGSD AVHVRITHDP PPENCFPNSG DSSVWATEDD YSRVWAINSD GAESPSKKTR
SSSSSEIGKS FFKTKLCFKF RAGTCPYSAS SCHFAHSAEE LRLPPPPPPN WQETVTEASR
NRESFAVSLG PRGNVAQTLK SPNWKTRICN KWQTTGYCPF GSHCHFAHGP SELHTFGGGL
VEGECKIGTS ATLDTKQRGQ VDTVTSLVSP GVSSQRTSSA VTQKPNGVRT QRKWKGPDKI
SRVYGDWIDD IE
