C3H28_ORYSJ
ID C3H28_ORYSJ Reviewed; 346 AA.
AC Q0JD07; A0A0P0WB10; Q7XQH5;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 74.
DE RecName: Full=Zinc finger CCCH domain-containing protein 28;
DE Short=OsC3H28;
GN OrderedLocusNames=Os04g0438700, LOC_Os04g35800; ORFNames=OJ000114_01.2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=CAE03121.3; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL606452; CAE03121.3; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008210; BAF14780.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS89327.1; -; Genomic_DNA.
DR EMBL; AK060634; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015636416.1; XM_015780930.1.
DR RefSeq; XP_015636417.1; XM_015780931.1.
DR AlphaFoldDB; Q0JD07; -.
DR SMR; Q0JD07; -.
DR STRING; 4530.OS04T0438700-01; -.
DR iPTMnet; Q0JD07; -.
DR PaxDb; Q0JD07; -.
DR PRIDE; Q0JD07; -.
DR EnsemblPlants; Os04t0438700-01; Os04t0438700-01; Os04g0438700.
DR GeneID; 4335921; -.
DR Gramene; Os04t0438700-01; Os04t0438700-01; Os04g0438700.
DR KEGG; osa:4335921; -.
DR eggNOG; KOG2494; Eukaryota.
DR HOGENOM; CLU_817318_0_0_1; -.
DR InParanoid; Q0JD07; -.
DR OMA; IECKYAH; -.
DR OrthoDB; 1543798at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q0JD07; OS.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0000381; P:regulation of alternative mRNA splicing, via spliceosome; IBA:GO_Central.
DR InterPro; IPR000571; Znf_CCCH.
DR SMART; SM00356; ZnF_C3H1; 6.
DR PROSITE; PS50103; ZF_C3H1; 6.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..346
FT /note="Zinc finger CCCH domain-containing protein 28"
FT /id="PRO_0000346823"
FT ZN_FING 103..131
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 138..165
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 181..209
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 211..237
FT /note="C3H1-type 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 282..308
FT /note="C3H1-type 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 314..340
FT /note="C3H1-type 6"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..99
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 40..54
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 65..86
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 117
FT /note="C -> R (in Ref. 5; AK060634)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 346 AA; 38698 MW; 5DDCC481C685C6C1 CRC64;
MASAETPNPD AEIPNTDAAA AADPAAAAPA AAATDPAAAG SPSPPLPPRK RRLSPTPSPT
RRSSRSRSRS PRRGRSRSRS RSRSRGRSAS PRYPDGKRRR HNDLNVEVCR DFLRDRCARA
DIECKYAHPH PTVAVDRDSK VTACADSLRN NCFRGRTCRY YHPPPHIQES LLRSIGVEDP
KVKMQVCRDF TRGRCSRSAN ECRFLHHSPL EDCAIVCQDF LRGRCDRKSC RYSHVMAHPM
PPPMRDIPMQ YPDMVYMPPP APLGVPMMMP PPSAPAAFSG NNYGVEVCRD YLKNMCNRES
CRFAHPDLNN EVMNTQVEVC RDFKRGECNR PACRFYHPPA SSNSIG
