C3H30_ARATH
ID C3H30_ARATH Reviewed; 716 AA.
AC P93755; Q94C18;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 2.
DT 25-MAY-2022, entry version 146.
DE RecName: Full=Zinc finger CCCH domain-containing protein 30;
DE Short=AtC3H30;
GN OrderedLocusNames=At2g41900; ORFNames=T6D20.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
RN [5]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-566, AND IDENTIFICATION BY
RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
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DR EMBL; U90439; AAB63552.2; -; Genomic_DNA.
DR EMBL; CP002685; AEC10046.1; -; Genomic_DNA.
DR EMBL; AY037232; AAK59832.1; -; mRNA.
DR EMBL; AY093957; AAM16218.1; -; mRNA.
DR PIR; E84847; E84847.
DR RefSeq; NP_565962.1; NM_129754.4.
DR AlphaFoldDB; P93755; -.
DR SMR; P93755; -.
DR BioGRID; 4127; 2.
DR IntAct; P93755; 2.
DR STRING; 3702.AT2G41900.1; -.
DR iPTMnet; P93755; -.
DR MetOSite; P93755; -.
DR PaxDb; P93755; -.
DR PRIDE; P93755; -.
DR ProteomicsDB; 240518; -.
DR EnsemblPlants; AT2G41900.1; AT2G41900.1; AT2G41900.
DR GeneID; 818790; -.
DR Gramene; AT2G41900.1; AT2G41900.1; AT2G41900.
DR KEGG; ath:AT2G41900; -.
DR Araport; AT2G41900; -.
DR TAIR; locus:2064647; AT2G41900.
DR eggNOG; KOG1595; Eukaryota.
DR HOGENOM; CLU_015068_1_0_1; -.
DR InParanoid; P93755; -.
DR OMA; KDINGHY; -.
DR OrthoDB; 417799at2759; -.
DR PhylomeDB; P93755; -.
DR PRO; PR:P93755; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; P93755; baseline and differential.
DR Genevisible; P93755; AT.
DR GO; GO:0005737; C:cytoplasm; IDA:TAIR.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR GO; GO:1902074; P:response to salt; IEP:TAIR.
DR Gene3D; 1.25.40.20; -; 1.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR045234; Unkempt-like.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR14493; PTHR14493; 1.
DR Pfam; PF12796; Ank_2; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR PRINTS; PR01415; ANKYRIN.
DR SMART; SM00248; ANK; 2.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF48403; SSF48403; 1.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
DR PROSITE; PS50088; ANK_REPEAT; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 1: Evidence at protein level;
KW ANK repeat; DNA-binding; Metal-binding; Phosphoprotein; Reference proteome;
KW Repeat; Zinc; Zinc-finger.
FT CHAIN 1..716
FT /note="Zinc finger CCCH domain-containing protein 30"
FT /id="PRO_0000371988"
FT REPEAT 90..120
FT /note="ANK 1"
FT REPEAT 125..157
FT /note="ANK 2"
FT ZN_FING 306..328
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 336..360
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 201..231
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 521..562
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 583..638
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 667..692
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 521..547
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 566
FT /note="Phosphoserine"
FT /evidence="ECO:0007744|PubMed:19376835"
SQ SEQUENCE 716 AA; 77992 MW; 4FB9220B113F5CB2 CRC64;
MCCGSDRLNQ IVSSRSSLPI SFEEDNNLVT NTDMNHLTVE TEDTFASLLE LAANNDVEGV
RLSIERDPSC VDEAGLWYGR QKGSKAMVND YRTPLMVAAT YGSIDVIKLI VSLTDADVNR
ACGNDQTTAL HCAASGGAVN AIQVVKLLLA AGADLNLLDA EGQRAGDVIV VPPKLEGVKL
MLQELLSADG SSTAERNLRV VTNVPNRSSS PCHSPTGENG GSGSGSPLGS PFKLKSTEFK
KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE
ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS PLSPSAAGNG MSHSNMAWPQ
PNVPALHLPG SNLQSSRLRS SLNARDIPTD EFNMLADYEQ QQLLNEYSNA LSRSGRMKSM
PPSNLEDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQQQQQS MLSPINTSFS
SPKSVDHSLF SGGGRMSPRN VVEPISPMSA RVSMLAQCVK QQQQQQQQQQ QQHQFRSLSS
RELRTNSSPI VGSPVNNNTW SSKWGSSNGQ PDWGMSSEAL GKLRSSSSFD GDEPDVSWVQ
SLVKETPAEA KEKAATSSSG EHVMKQPNPV EPVMDHAGLE AWIEQMQLDQ LVAQQN
