C3H32_ARATH
ID C3H32_ARATH Reviewed; 468 AA.
AC Q84W91; A4IJ33; O82252;
DT 26-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT 26-APR-2005, sequence version 2.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Zinc finger CCCH domain-containing protein 32;
DE Short=AtC3H32;
DE AltName: Full=Zinc finger CCCH domain-containing protein ZFN-like 1;
GN OrderedLocusNames=At2g47850; ORFNames=F17A22.24;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Bautista V.R., Chen H., De Los Reyes C., Wu S.Y., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 318-468.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q84W91-1; Sequence=Displayed;
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC63639.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC005309; AAC63639.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC10897.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10899.1; -; Genomic_DNA.
DR EMBL; BT030391; ABO45694.1; -; mRNA.
DR EMBL; BT004106; AAO42129.1; -; mRNA.
DR PIR; C84920; C84920.
DR RefSeq; NP_001078078.1; NM_001084609.1. [Q84W91-1]
DR RefSeq; NP_182306.2; NM_130352.3. [Q84W91-1]
DR AlphaFoldDB; Q84W91; -.
DR BioGRID; 4732; 2.
DR IntAct; Q84W91; 2.
DR STRING; 3702.AT2G47850.1; -.
DR PaxDb; Q84W91; -.
DR PRIDE; Q84W91; -.
DR ProteomicsDB; 240448; -. [Q84W91-1]
DR EnsemblPlants; AT2G47850.1; AT2G47850.1; AT2G47850. [Q84W91-1]
DR EnsemblPlants; AT2G47850.3; AT2G47850.3; AT2G47850. [Q84W91-1]
DR GeneID; 819397; -.
DR Gramene; AT2G47850.1; AT2G47850.1; AT2G47850. [Q84W91-1]
DR Gramene; AT2G47850.3; AT2G47850.3; AT2G47850. [Q84W91-1]
DR KEGG; ath:AT2G47850; -.
DR Araport; AT2G47850; -.
DR TAIR; locus:2043368; AT2G47850.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_033292_1_0_1; -.
DR InParanoid; Q84W91; -.
DR OMA; RYNHPPD; -.
DR PhylomeDB; Q84W91; -.
DR PRO; PR:Q84W91; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q84W91; baseline and differential.
DR Genevisible; Q84W91; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00642; zf-CCCH; 5.
DR SMART; SM00356; ZnF_C3H1; 5.
DR SUPFAM; SSF90229; SSF90229; 5.
DR PROSITE; PS50103; ZF_C3H1; 5.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Nucleus;
KW Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..468
FT /note="Zinc finger CCCH domain-containing protein 32"
FT /id="PRO_0000213915"
FT ZN_FING 45..73
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 90..118
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 136..164
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 289..317
FT /note="C3H1-type 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 335..363
FT /note="C3H1-type 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..19
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 468 AA; 50040 MW; 1D5BD014E33D9F98 CRC64;
MYARNPPLNG SQSAQAPDWT PADADTGLQE SMWRLGLGSD SYPERPGAPD CAYYMRTGVC
GYGNRCRYNH PRDRASVEAT VRATGQYPER FGEPPCQFYL KTGTCKFGAS CKFHHPKNAG
GSMSHVPLNI YGYPVREGDN ECSYYLKTGQ CKFGITCKFH HPQPAGTTVP PPPASAPQFY
PSVQSLMPDQ YGGPSSSLRV ARTLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSAPVSPAL
SPGAQHAVGA TSLYGVTQLT STTPSLPGVY PSLSSPTGVI QKEQAFPERP GEPECQYYLK
TGDCKFGTSC KFHHPRDRVP PRANCVLSPI GLPLRPGVQR CTFYVQNGFC KFGSTCKFDH
PMGTIRYNPS ASSLADAPVA PYPVSSLLGA LAAAPSSSST ELIAGGAKDA YMTGVPTSRS
TSNISAGLIF SQSGGSIPFS ELQLSSQSSL PLTGSRITRQ GREIRRSF
